GENCODE Management, Dissemination and Training

GENCODE 管理、传播和培训

• 批准号: 9980961
• 负责人: Paul Flicek
• 金额: $ 8.83万
• 依托单位: EUROPEAN MOLECULAR BIOLOGY LABORATORY
• 依托单位国家: 美国
• 财政年份: 2013
• 资助国家: 美国
• 起止时间: 2013-04-01 至 2021-09-13
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9980961
• 关键词: Archives; Bioinformatics; Clinical; Communities; Contracts; Data; Data Discovery; Data Set; Documentation; Educational workshop; Electronic Mail; Ensure; European; Funding; Genes; Genome; Genomics; Graph; Human; Human Genetics; Human Resources; Institutes; Laboratories; Maintenance; Metadata; Molecular Biology; Mouse Strains; Mus; Phase; Population; Process; Registries; Reporting; Research; Research Support; Resources; Role; Specificity; Structure; System; Teleconferences; Testing; Tissues; Training; Training Programs; Transcript; Trust; Update; annotation system; base; computer infrastructure; data access; design; formycin triphosphate; genome annotation; genome browser; meetings; member; mouse genetics; new technology; news; software infrastructure; symposium; tool; training project; web interface; web site

MANAGEMENT, DISSEMINATION AND TRAINING - PROJECT SUMMARY The management, dissemination and training planned for the next four years of GENCODE will largely continue the practices found to be successful in the current project. The major difference for this proposal is the transition of the project to EMBL-EBI. The date of final transition for the WTSI HAVANA team is set for 1 April 2017, coincident with the start of the proposed funding from this application, and will follow an orderly process informed by previous resource transitions from WTSI to EMBL-EBI. As the technical transition proceeds, we will move computational and software infrastructure from WTSI to EMBL-EBI through 2016 and early 2017, and provide HAVANA staff with guest logins to for testing before transition. The staff and physical transition will occur in 2017. All HAVANA staff moving to EMBL-EBI will be offered EMBL contracts with a start date of 1 April 2017. In terms of project management, the Scientific Advisory Board (SAB) will continue to provide advice on all aspects of the project, including progress, priorities, new technologies, operational processes of the consortium, and will also serve as representatives of the user community. The SAB will meet annually. A Research Support Officer will be deployed at 0.5 FTE on the project to organize the annual SAB meetings, and also to ensure regular meetings and teleconferences between the partners, as well as regular updates and reports. In terms of access, the major aims for GENCODE are regular releases of annotation; maintenance and extension of the existing GENCODE portal website (http://www.gencodegenes.org) providing information to the research and clinical community working on human and mouse genetics and genomics; and the design and implementation of new web interfaces. Annotation will be released through the Ensembl and UCSC browsers, as well as via FTP and HTTP, and Track Hubs. The GENCODE portal, used for dedicated data download and specific project news, will be expanded to provide in-depth documentation and details of the processes used within the GENCODE consortium. To further aid data access and discovery via the Ensembl website, new views of visually highlighting the differences and similarities in annotation for different strains of mice will be developed. The training plans for the next phase of GENCODE include extensive workshops, on the use of GENCODE annotation, how to use GENCODE tools, and how to submit annotation to the public genomic archives. Support for users will also be provided remotely by an email Helpdesk, where queries will be tracked by Request Tracker.

管理、传播和培训 - 项目摘要 GENCODE 未来四年计划的管理、传播和培训将 很大程度上延续了当前项目中成功的做法。主要区别 该提案的重点是将该项目过渡到 EMBL-EBI。最终过渡日期 WTSI HAVANA 团队定于 2017 年 4 月 1 日启动，与拟议资助的开始时间一致 从此申请中，并将遵循先前资源通知的有序流程 从 WTSI 过渡到 EMBL-EBI。随着技术转型的进行，我们将采取行动 2016 年及年初从 WTSI 到 EMBL-EBI 的计算和软件基础设施 2017 年，并为哈瓦那员工提供访客登录，以便在过渡前进行测试。工作人员和 物理过渡将于 2017 年进行。所有搬到 EMBL-EBI 的哈瓦那员工都将获得 EMBL 合同的开始日期为 2017 年 4 月 1 日。在项目管理方面，科学 顾问委员会（SAB）将继续就该项目的各个方面提供建议，包括 联盟的进展、优先事项、新技术、运营流程，还将 担任用户社区的代表。 SAB 每年举行一次会议。一项研究 支持官员将在 0.5 FTE 的项目上部署，以组织年度 SAB 会议， 并确保合作伙伴之间定期举行会议和电话会议，以及 定期更新和报告。在访问方面，GENCODE 的主要目标是定期 注释的发布；维护和扩展现有 GENCODE 门户网站 (http://www.gencodegenes.org) 向研究和临床界提供信息 研究人类和小鼠遗传学和基因组学；以及设计和实施 新的网络界面。注释将通过 Ensembl 和 UCSC 浏览器发布，如下 以及通过 FTP 和 HTTP 以及 Track Hubs。 GENCODE 门户，用于专用数据 下载和具体项目新闻，将扩展以提供深入的文档和 GENCODE 联盟内使用的流程的详细信息。为了进一步帮助数据访问和 通过 Ensembl 网站发现，视觉上突出差异的新观点和 将开发不同品系小鼠注释的相似性。培训计划为 GENCODE 的下一阶段包括关于 GENCODE 注释使用的广泛研讨会， 如何使用 GENCODE 工具，以及如何向公共基因组档案提交注释。 还将通过电子邮件帮助台远程为用户提供支持，其中将有疑问 由请求跟踪器跟踪。