Biotin sensing and chromatin remodeling by holocarboxylase synthetase

全羧化酶合成酶的生物素传感和染色质重塑

• 批准号: 8007021
• 负责人: JANOS ZEMPLENI
• 金额: $ 6万
• 依托单位: UNIVERSITY OF NEBRASKA LINCOLN
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-01-07 至 2010-12-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8007021
• 关键词: Acetyl-CoA Carboxylase; Address; Affect; Affinity; American; Amides; Binding; Binding Proteins; Biological Assay; Biotin; Biotinylation; Cell Line; Cell Nucleus; Cell Proliferation; Cell surface; Cells; Chromatin; Chromosome abnormality; Co-Immunoprecipitations; Coenzymes; Computer Simulation; Culture Media; Cytoplasm; DNA Binding Domain; DNA Repair; DNA-Binding Proteins; Dietary intake; Epigenetic Process; Event; Gene Expression; Gene Expression Regulation; Genes; Genetic Transcription; Genome Stability; Genomics; Goals; Health; Heterochromatin; Histone H2A; Histone H3; Histone H4; Histones; Holocarboxylase Synthetase Deficiency; Homeostasis; Human; Human Cell Line; K-18 conjugate; Ligase; Link; Lymphoid Cell; Lysine; Malignant Neoplasms; Mediating; Messenger RNA; Methods; Molecular Chaperones; Multivitamin; Nuclear; Nuclear Translocation; Nutrient; Overdose; Play; Pregnant Women; Process; Proteins; Public Health; Pyruvate Carboxylase; Recruitment Activity; Regulation; Relative (related person); Reporter Genes; Repression; Retrotransposon; Risk; Role; SECTM1 gene; Site; Sodium; Structure; Supplementation; Techniques; Testing; Time; Transgenic Organisms; Two-Hybrid System Techniques; Vitamins; Yeasts; biotin transporter; cancer risk; chromatin immunoprecipitation; chromatin remodeling; gene repression; holocarboxylase synthetases; meetings; methylcrotonyl coA carboxylase; methylmalonyl-CoA decarboxylase; public health relevance; research study; response; sensor; uptake; Acetyl-CoA Carboxylase; Address; Affect; Affinity; American; Amides; Binding; Binding Proteins; Biological Assay; Biotin; Biotinylation; Cell Line; Cell Nucleus; Cell Proliferation; Cell surface; Cells; Chromatin; Chromosome abnormality; Co-Immunoprecipitations; Coenzymes; Computer Simulation; Culture Media; Cytoplasm; DNA Binding Domain; DNA Repair; DNA-Binding Proteins; Dietary intake; Epigenetic Process; Event; Gene Expression; Gene Expression Regulation; Genes; Genetic Transcription; Genome Stability; Genomics; Goals; Health; Heterochromatin; Histone H2A; Histone H3; Histone H4; Histones; Holocarboxylase Synthetase Deficiency; Homeostasis; Human; Human Cell Line; K-18 conjugate; Ligase; Link; Lymphoid Cell; Lysine; Malignant Neoplasms; Mediating; Messenger RNA; Methods; Molecular Chaperones; Multivitamin; Nuclear; Nuclear Translocation; Nutrient; Overdose; Play; Pregnant Women; Process; Proteins; Public Health; Pyruvate Carboxylase; Recruitment Activity; Regulation; Relative (related person); Reporter Genes; Repression; Retrotransposon; Risk; Role; SECTM1 gene; Site; Sodium; Structure; Supplementation; Techniques; Testing; Time; Transgenic Organisms; Two-Hybrid System Techniques; Vitamins; Yeasts; biotin transporter; cancer risk; chromatin immunoprecipitation; chromatin remodeling; gene repression; holocarboxylase synthetases; meetings; methylcrotonyl coA carboxylase; methylmalonyl-CoA decarboxylase; public health relevance; research study; response; sensor; uptake

DESCRIPTION (provided by applicant): Cells respond to biotin deficiency by increasing the expression of the biotin transporters SMVT and MCT1, which serve as "checkpoints" for biotin entry into cells. It is unknown, however, how cells sense biotin status and which mechanisms mediate regulation of biotin transporters. Evidence has been provided that biotin regulates gene expression directly at the chromatin level. Previous studies suggested that holocarboxylase synthetase (HCS) mediates the binding of biotin to histones (DNA-binding proteins) H2A, H3, and H4, and that biotinylation of histones causes gene repression. Our studies are consistent with the hypotheses that biotin-dependent nuclear translocation of HCS serves as a biotin sensor, and that binding of biotin to histones by HCS is associated with chromatin remodeling events that regulate the transcription of biotin transporter genes. Long-term objective: Our long-term objective is to elucidate mechanisms of biotin homeostasis in humans. We seek to identify both sensors of cellular biotin and mechanisms that regulate the "checkpoints" for biotin entry into cells, SMVT and MCT1. We also seek to elucidate mechanisms of HCS regulation in humans by identifying and characterizing HCS-binding proteins. Specific aim: To identify mechanisms of biotin-dependent nuclear translocation of HCS, and to characterize HCS-dependent chromatin remodeling events that affect gene transcription at biotin transporter loci. This aim will test the following hypotheses. (1) HCS serves as a biotin sensor in human cytoplasm. Increased cellular concentrations of biotin are associated with HCS-mediated biotinylation of HCS-binding proteins, triggering nuclear translocation of HCS. (2) Nuclear HCS-binding proteins recruit HCS to specific regions in chromatin, including SMVT and MCT1 loci. (3) HCS catalyzes biotinylation of histones at target loci; the increased biotinylation of histones at SMVT and MCT1 loci in response to biotin supplementation decreases the transcription of biotin transporter genes SMVT and MCT1. (4) Collectively, intracellular biotin directly controls the expression of biotin transporters, mediated by HCS-dependent chromatin remodeling. Methods: HCS-binding proteins in cytoplasm and nucleus will be identified by using techniques such as yeast-two-hybrid assays, in silico domain searches, co-immunoprecipitations, and transgenic cell lines. The relative enrichment of HCS and biotinylated histones at biotin transporter loci will be quantified by chromatin immunoprecipitation assays and real-time PCR in both human biotin supplementation studies and human cell lines. Transcription of SMVT and MCT1 will be quantified by using real-time PCR and reporter-gene constructs in both human biotin supplementation studies and transgenic cell lines. PUBLIC HEALTH RELEVANCE: Relevance to public health: Biotinylation of histones is a unique epigenetic mark because it depends on the dietary intake of the essential vitamin biotin. Biotin deficiency is prevalent among Americans, and moderate biotin deficiency has been observed in up to 50% of pregnant women. Previous studies suggest that biotinylation of histones plays a critical role in gene regulation and genomic stability, thereby decreasing the risk for chromosomal abnormalities and cancer.

描述（由申请人提供）：细胞通过增加生物素转运蛋白SMVT和MCT1的表达来响应生物素缺乏症，这些表达是生物素进入细胞的“检查点”。但是，未知细胞如何感知生物素状态以及哪些机制介导了生物素转运蛋白的调节。已经提供了生物素直接在染色质水平调节基因表达。先前的研究表明，全羧化酶合成酶（HCS）介导了生物素与组蛋白（DNA结合蛋白）H2A，H3和H4的结合，并且组蛋白的生物素化引起基因抑制。我们的研究与HCS作为生物素传感器的生物素依赖性核转运的假设一致，并且HCS通过HCS与组蛋白与组蛋白的结合与调节生物素转运蛋白转录基因转录的染色质重塑事件有关。长期目标：我们的长期目标是阐明人类生物素稳态的机制。我们试图鉴定细胞生物素的两个传感器和调节生物素进入细胞SMVT和MCT1的“检查点”的机制。我们还试图通过识别和表征HCS结合蛋白来阐明人类中HCS调节的机制。具体目的：确定HCS生物素依赖性核转运的机制，并表征HCS依赖性的染色质重塑事件，这些染色质重塑事件会影响生物素转运蛋白基因座基因转录的基因转录。此目标将检验以下假设。 （1）HCS在人类细胞质中充当生物素传感器。生物素的细胞浓度升高与HCS介导的HCS结合蛋白的生物素化有关，从而触发HCS的核易位。 （2）核HCS结合蛋白将HC募集到包括SMVT和MCT1基因座在内的染色质中的特定区域。 （3）HCS在靶基因座催化组蛋白的生物素化；响应生物素补充剂时，组蛋白在SMVT和MCT1基因座上增加的生物素化降低了生物素转运蛋白转运蛋白基因SMVT和MCT1的转录。 （4）统称，细胞内生物素直接控制了由HCS依赖性染色质重塑介导的生物素转运蛋白的表达。方法：将通过使用诸如酵母 - 两种杂交测定的技术，在计算机域搜索，共免疫沉淀和转基因细胞系中鉴定细胞质和核中的HCS结合蛋白。 HCS和生物素化组蛋白在生物素转运蛋白基因座的相对富集将通过染色质免疫沉淀测定法和实时PCR进行量化，并在人类的生物素补充研究和人类细胞系中进行定量。 SMVT和MCT1的转录将通过在人类生物素补充研究和转基因细胞系中使用实时PCR和报告基因构建体来量化。公共卫生相关性：与公共卫生的相关性：组蛋白的生物素化是一个独特的表观遗传标记，因为它取决于基本维生素生物素的饮食摄入。在美国人中，生物素缺乏症普遍存在，并且在多达50％的孕妇中观察到了中度的生物素缺乏症。先前的研究表明，组蛋白的生物素化在基因调节和基因组稳定性中起关键作用，从而降低了染色体异常和癌症的风险。