Identification of Tetrahymena DNA Rearrangement Genes

四膜虫 DNA 重排基因的鉴定

• 批准号: 6823573
• 负责人: DOUGLAS LEE CHALKER
• 金额: $ 23.27万
• 依托单位: WASHINGTON UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2004
• 资助国家: 美国
• 起止时间: 2004-08-01 至 2009-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/6823573
• 关键词: Tetrahymena; chemical stability; chromatin immunoprecipitation; developmental genetics; gene rearrangement; gene targeting; genetic library; genetic regulation; genetic screening; green fluorescent proteins; immunoaffinity chromatography; nucleic acid sequence; phenotype; protein localization; protein protein interaction; proteomics; protozoal genetics; subtraction hybridization

DESCRIPTION (provided by applicant): The ciliate Tetrahymena thermophila excises approximately 6000 specific DNA segments from its somatic nucleus during development. This project aims to understand the regulation of this massive genome reorganization and ultimately learn fundamental principles governing chromosome structure and stability. Understanding how particular DNA segments, called internal eliminated sequences (IES), are selectively excised is challenged by the fact that they share little common structure. Currently, we have limited knowledge of the protein machinery that recognizes and excises these 6000 IES. While four proteins have been linked to this process, their exact roles have yet to be fully elucidated. We have identified five genes encoding novel proteins putatively involved in DNA rearrangement. These were identified using a Green Fluorescence Protein (GFP)-based screening strategy designed to find developmentally expressed proteins that localize specifically to the differentiating nuclei where and when DNA rearrangement occurs. To demonstrate whether these five candidates are required for rearrangement, we will knock out their genes and analyze the phenotype of the resulting transgenic strains. Furthermore, we will test whether these proteins interact with previously identified DNA rearrangement proteins and/or associate with the IES during their excision. Initial characterization of one of these genes, LIA1, indicates that its protein very likely participates in DNA rearrangement. Characterization of additional components of the DNA rearrangement machinery will greatly enhance our understanding of this process. This biological phenomenon provides a unique system with which to discover mechanisms cells use to recognize individual chromosomal segments throughout the genome. Such mechanisms are likely critical for ensuring chromosome stability. Given that cancer cells commonly exhibit aberrant DNA rearrangements, identification of the cellular mechanisms that ensure faithful chromosome maintenance is an important step leading to an understanding of the molecular basis of disease associated with genetic instability.

描述（由申请人提供）：纤毛虫嗜热四膜虫在发育过程中从其体细胞核中切除大约 6000 个特定的 DNA 片段。该项目旨在了解这种大规模基因组重组的调控，并最终了解控制染色体结构和稳定性的基本原理。了解特定的 DNA 片段（称为内部消除序列 (IES)）如何被选择性切除受到了挑战，因为它们几乎没有共同的结构。目前，我们对识别和切除这 6000 个 IES 的蛋白质机制了解有限。虽然有四种蛋白质与这一过程有关，但它们的确切作用尚未完全阐明。我们已经鉴定出五个编码新蛋白质的基因，这些蛋白质可能参与 DNA 重排。这些是使用基于绿色荧光蛋白 (GFP) 的筛选策略来识别的，该策略旨在寻找发育表达的蛋白质，这些蛋白质特异性地定位于发生 DNA 重排的分化细胞核。为了证明这五个候选者是否需要重排，我们将敲除它们的基因并分析所得转基因菌株的表型。此外，我们将测试这些蛋白是否与先前识别的 DNA 重排蛋白相互作用和/或在切除过程中与 IES 相关。其中一个基因 LIA1 的初步表征表明，其蛋白质很可能参与 DNA 重排。 DNA 重排机制其他成分的表征将极大地增强我们对这一过程的理解。这种生物现象提供了一个独特的系统，通过该系统可以发现细胞用于识别整个基因组中单个染色体片段的机制。这种机制可能对于确保染色体稳定性至关重要。鉴于癌细胞通常表现出异常的 DNA 重排，识别确保染色体忠实维护的细胞机制是理解与遗传不稳定性相关疾病的分子基础的重要一步。