Expanding the Genomics Education Partnership: Regional Mentoring and Training Networks to Diversify Bioinformatics Education and Research

扩大基因组学教育合作伙伴关系：区域指导和培训网络使生物信息学教育和研究多样化

• 批准号: 10596505
• 负责人: DOUGLAS LEE CHALKER
• 金额: $ 17.6万
• 依托单位: UNIVERSITY OF ALABAMA IN TUSCALOOSA
• 依托单位国家: 美国
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-04-15 至 2025-03-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10596505
• 关键词: Acceleration; Automobile Driving; Bioinformatics; Canada; Categories; Collaborations; Communities; Complex; Computer Analysis; Education; Educational Assessment; Educational Curriculum; Educational process of instructing; Equity; Ethnic Origin; Ethnic Population; Evolution; Faculty; Faculty Recruitment; Genes; Genetic; Genome; Genomics; Geographic Distribution; Geography; Goals; Institution; Learning; Literature; Location; Mathematics; Mentors; Mentorship; Minority-Serving Institution; Modeling; Molecular Biology; Outcome; Paper; Participant; Population; Publishing; Puerto Rico; Race; Reporting; Research; Research Peer Review; Research Personnel; Research Project Grants; STEM career; STEM student; Scholarship; Science; Scientist; Students; Surveys; System; Taiwan; Techniques; Training; Underrepresented Populations; Underrepresented Students; Universities; Woman; Work; biological systems; college; community building; community college; comparative genomics; computer science; curriculum development; faculty community; faculty mentor; faculty support; genome annotation; genomic data; interest; member; novel; outreach; precision medicine; racial population; recruit; skills; socioeconomics; student participation; symposium; teacher; teacher scholarship; undergraduate research; undergraduate student; workforce needs

Project Summary The Genomics Education Partnership (GEP) is a nationwide faculty-driven collaboration that, through training, mentorship, and outreach enables a broad range of institutions to introduce bioinformatics into the undergraduate curriculum. Bioinformatics training extends the teaching of molecular biology, strengthens students' computer science and math skills, and emphasizes the power of computational approaches to explore biological systems. Inquiry-driven genomics research engages students in scientific discovery while maintaining a widely distributed network of teacher-scientists proficient in cutting edge experimental techniques. To date the GEP has trained hundreds of faculty and impacted thousands of undergraduates. A majority of participating faculty and students are women, and a third of GEP participant institutions are minority-serving. From the start, the GEP has sought to: 1. Introduce bioinformatics into the undergraduate curriculum through research 2. Create a scalable system to tackle big projects with many students working in parallel 3. Model “team science” through collaboration of a widely dispersed team 4. Publish results in the scientific literature with faculty and student authors co-authors 5. Publish assessment results to contribute to the scholarship of teaching and learning. The GEP engages undergraduates in meaningful genomics research regardless of the selectivity, location, or research focus of their institution, as supported by our published assessments of education outcomes. This IPERT proposal will further enhance the GEP's commitment to inclusive training of the scientific workforce. Specific Aim 1 will develop regional nodes to recruit, train, and mentor inclusive local communities of faculty and students engaged in genomics teaching and research. New faculty recruitment locally and at equity-promoting national STEM conferences will focus on institutions that serve students from underrepresented groups. Regional symposia will enable undergraduate students' direct dissemination of their research and participation in the scientific community. Specific Aim 2 will broaden the GEP's scientific scope, capacity, and dissemination by creating a new investigator-initiated, undergraduate-powered gene annotation workflow, with an associated genomics curriculum, that will enable community annotation projects for any eukaryotic genome, driving scalable team science approaches to novel and emerging genomics questions. This new platform incorporates rapid open-access micropublication of gene reports by undergraduate authors, further engaging students in their science.

项目概要 基因组学教育合作伙伴关系 (GEP) 是一个由教师驱动的全国性合作伙伴关系， 通过培训、指导和推广，使广泛的机构能够引入 生物信息学纳入本科课程，生物信息学培训延伸了教学。 分子生物学，加强学生的计算机科学和数学技能，并强调 探索生物系统的计算方法的力量。 研究让学生参与科学发现，同时维持广泛分布的网络 迄今为止，GEP 拥有精通尖端实验技术的教师科学家。 培训了数百名教师并影响了数千名本科生。 参与 GEP 的教职员工和学生都是女性，三分之一的 GEP 参与机构是女性 从一开始，GEP 就致力于： 1.通过研究将生物信息学引入本科课程 2. 创建一个可扩展的系统来处理许多学生并行工作的大型项目 3. 通过广泛分散的团队协作建立“团队科学”模型 4. 与教师和学生作者合著者在科学文献中发表成果 5. 公布评估结果，为教学学术做出贡献。 GEP 让本科生参与有意义的基因组学研究，无论其背景如何 其机构的选择性、地点或研究重点，由我们发布的支持 该 IPERT 提案将进一步加强 GEP 的评估。 致力于科学劳动力的包容性培训 具体目标 1 将发展区域性。 招募、培训和指导参与的包容性当地社区教师和学生的节点 基因组学教学和研究方面的新教师招聘和公平促进。 国家 STEM 会议将重点关注为代表性不足的学生提供服务的机构 区域研讨会将使本科生能够直接传播他们的观点。 具体目标 2 将扩大 GEP 的研究和参与。 通过创建一个新的研究者发起的、 本科生驱动的基因注释工作流程以及相关的基因组学课程， 这将使任何真核基因组的社区注释项目成为可能，推动可扩展的团队 这个新平台采用了解决新颖和新兴基因组学问题的科学方法。 本科生作者基因报告的快速开放获取微出版，进一步吸引 学生在他们的科学领域。

项目成果

The Genomics Education Partnership: First findings on genomics research in community colleges.

基因组学教育合作伙伴关系：社区大学基因组学研究的初步发现。

• 发表时间: 2023
• 作者: Croonquist, Paula;Falkenberg, Virginia;Minkovsky, Natalie;Sawa, Alexa;Skerritt, Matthew;Sustacek, Maire Kate;Diotti, Raffaella;Aragon, Anthony D;Mans, Tamara;Sherr, Goldie L;Ward, Catherine;Hall;Goodman, Anya L;Reed, Laura K;Lo
• 通讯作者: Lo

Drosophila yakuba - Tsc1.

果蝇 yakuba - Tsc1。

• 发表时间: 2021
• 作者: Lose, Bailey;Myers, Abigail;Fondse, Savanah;Alberts, Ian;Stamm, Joyce;Youngblom, James J;Rele, Chinmay P;Reed, Laura K
• 通讯作者: Reed, Laura K

A putative de novo evolved gene required for spermatid chromatin condensation in Drosophila melanogaster.

黑腹果蝇精细胞染色质浓缩所需的推定从头进化基因。

• 发表时间: 2021-09
• 影响因子: 4.5
• 作者: Rivard, Emily L;Ludwig, Andrew G;Patel, Prajal H;Grandchamp, Anna;Arnold, Sarah E;Berger, Alina;Scott, Emilie M;Kelly, Brendan J;Mascha, Grace C;Bornberg;Findlay, Geoffrey D
• 通讯作者: Findlay, Geoffrey D

Manual annotation of Drosophila genes: a Genomics Education Partnership protocol.

果蝇基因的手动注释：基因组学教育合作伙伴协议。

• 发表时间: 2022
• 作者: Rele, Chinmay P;Sandlin, Katie M;Leung, Wilson;Reed, Laura K
• 通讯作者: Reed, Laura K

Drosophila grimshawi - Rheb.

果蝇 grimshawi - Rheb。

• 发表时间: 2021-02-16
• 作者: Rele, Chinmay P;Williams, Jared;Reed, Laura K;Youngblom, James J;Leung, Wilson
• 通讯作者: Leung, Wilson