Severe Enteric Disease: Pathogenesis and Response

严重肠道疾病：发病机制和反应

• 批准号: 8683079
• 负责人: JAMES B KAPER
• 金额: $ 145.52万
• 依托单位: UNIVERSITY OF MARYLAND BALTIMORE
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-07-20 至 2016-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8683079
• 关键词: Address; Adult; Age; Antigens; Area; Asia; Bacteria; Bacterial Infections; Biological Assay; Biological Markers; Biometry; Cessation of life; Child; Childhood; Clinical; Clinical Research; Clostridium; Collaborations; Communicable Diseases; Country; DNA; Data; Databases; Diarrhea; Disease; Doctor of Philosophy; Dysentery; Enteral; Enterobacteriaceae; Enterococcus; Enterotoxins; Epidemiologic Studies; Epidemiology; Epithelial; Epithelial Cells; Escherichia coli; Escherichia coli EHEC; Escherichia coli Infections; Event; Faculty; Feces; Freezing; Functional disorder; Gastroenterologist; Gastrointestinal tract structure; Genes; Genetic; Genome; Genomics; Genotype; Goals; Health; Human; Human Genetics; Human Microbiome; IL8 gene; Immune response; Immune system; Immunoglobulin A; Immunoglobulin G; Immunoglobulins; Immunology; In Vitro; Individual; Infection; Infection Control; Inflammation; Inflammatory; Interleukin-10; International; Intestinal Motility; Intestines; Investigation; Knockout Mice; Laboratories; Lactobacillus; Lactoferrin; Leadership; Maryland; Metagenomics; Modeling; Multicenter Studies; Mus; Nucleic Acids; Outcome; Pathogenesis; Pathogenicity Island; Patients; Pattern recognition receptor; Permeability; Physiological; Physiology; Polymorphism Analysis; Predisposition; Production; Recording of previous events; Research; Research Personnel; Research Project Grants; Resources; Role; Scientist; Sequence Analysis; Series; Serine Protease; Shigella; Shigella Infections; Single Nucleotide Polymorphism; Site; South Africa; Specialist; Specimen; Strategic Planning; Symptoms; TLR4 gene; Testing; Tissues; Tumor necrosis factor receptor 11b; Type III Secretion System Pathway; Universities; Ursidae Family; Veillonella; Virulence; Virulence Factors; Work; adaptive immunity; authority; cytokine; enteric pathogen; enteroaggregative Escherichia coli; enteropathogenic Escherichia coli; enterotoxigenic Escherichia coli; genome sequencing; in vitro Assay; insight; intestinal epithelium; mast cell; member; microbial; microbiome; multidisciplinary; mutant; pathogen; public health relevance; research study; response; vaccine evaluation; volunteer

DESCRIPTION (provided by applicant): Infectious enteric diseases are major health problem throughout the world. This application seeks to establish the University of Maryland Enterics Research Investigational Network (ERIN) Cooperative Research Center (CRC) to investigate important clinical, pathogenesis, and host response Issues of enteric disease. The particular enteric pathogens that will be the focus of this CRC are Shigella spp. and diarrheagenic E. coli (DEC), which were implicated as the bacterial pathogens most frequently isolated from fatal cases of diarrheal disease in the Global Enteric Multicenter Study (GEMS). The GEMS is being conducted at 7 sites in Africa and South Asia and is the largest study ever conducted of diarrheal disease in children under the age of 5. Clinical specimens and bacterial isolates from GEMS as well as hypotheses arising from this study will be further examined using a variety of approaches including bacterial pathogenesis assays, intestinal physiology studies, fecal adaptive immunity and immunological markers, bacterial genomics, microbiomes, and human SNP analysis. Three multi-component and highly integrated projects are proposed. Project 1 will focus on the pathogenesis of DEC and Shigella infections. Genome sequences of enteropathogenic E. coli (EPEC) strains isolated from lethal cases of diarrhea, from non-lethal infections and from controls will be determined. Potential EPEC virulence factors implicated in the genomic analysis will be further characterized using a variety of assays and models to study pathogenesis. An enterotoxin originally discovered in Shigella but also present in DEC will be further characterized. In Project 2, different aspects of host response will be studied, including physiology studies of intestinal tissue infected with wild type and mutant Shigella and DEC strains, as well as the characterization of fecal immunoglobulin and cytokine levels in stool specimens from GEMS patients. Project 3 will investigate clinical aspects using clinical specimens from GEMS to determine patient SNPs in genes previously associated with susceptibility to diarrheal disease, bacterial interactions using microbiome and laboratory co-infection studies, and studies on the pangenomics of Shigella strains isolated from lethal and non-lethal disease.

描述（由申请人提供）：传染性肠道疾病是全世界的主要健康问题。该申请旨在建立马里兰大学肠道研究调查网络 (ERIN) 合作研究中心 (CRC)，以研究肠道疾病的重要临床、发病机制和宿主反应问题。本次 CRC 重点关注的特殊肠道病原体是志贺氏菌属。和致泻性大肠杆菌 (DEC)，在全球肠道多中心研究 (GEMS) 中，它们被认为是最常从致命性腹泻病例中分离出来的细菌病原体。 GEMS 正在非洲和南亚的 7 个地点进行，是迄今为止针对 5 岁以下儿童腹泻病进行的最大规模的研究。GEMS 的临床标本和细菌分离物以及本研究中产生的假设将得到进一步检验使用多种方法，包括细菌发病机制测定、肠道生理学研究、粪便适应性免疫和免疫学标记、细菌基因组学、微生物组和人类 SNP 分析。提出了三个多组件和高度集成的项目。项目 1 将重点研究 DEC 和志贺氏菌感染的发病机制。将确定从致死性腹泻病例、非致死性感染和对照中分离出的肠致病性大肠杆菌 (EPEC) 菌株的基因组序列。基因组分析中涉及的潜在 EPEC 毒力因子将使用各种测定和模型来进一步表征，以研究发病机制。最初在志贺氏菌中发现但也存在于 DEC 中的肠毒素将被进一步表征。在项目2中，将研究宿主反应的不同方面，包括感染野生型和突变型志贺氏菌和DEC菌株的肠道组织的生理学研究，以及GEMS患者粪便标本中粪便免疫球蛋白和细胞因子水平的表征。项目 3 将利用 GEMS 的临床标本来研究临床方面，以确定先前与腹泻病易感性相关的患者基因中的 S​​NP，利用微生物组和实验室共感染研究进行细菌相互作用，以及从致死性和非致死性志贺氏菌中分离的志贺氏菌菌株的泛基因组学研究。致命的疾病。

项目成果

Microbiota that affect risk for shigellosis in children in low-income countries.

• DOI: 10.3201/eid2101.140795
• 发表时间: 2015-02
• 期刊: Emerging infectious diseases
• 影响因子: 11.8
• 作者: Lindsay B;Oundo J;Hossain MA;Antonio M;Tamboura B;Walker AW;Paulson JN;Parkhill J;Omore R;Faruque AS;Das SK;Ikumapayi UN;Adeyemi M;Sanogo D;Saha D;Sow S;Farag TH;Nasrin D;Li S;Panchalingam S;Levine MM;Kotloff K;Magder LS;Hungerford L;Sommerfelt H;Pop M;Nataro JP;Stine OC
• 通讯作者: Stine OC

Bacterial Factors Associated with Lethal Outcome of Enteropathogenic Escherichia coli Infection: Genomic Case-Control Studies.

• DOI: 10.1371/journal.pntd.0003791
• 发表时间: 2015-05
• 期刊: PLoS neglected tropical diseases
• 影响因子: 3.8
• 作者: Donnenberg MS;Hazen TH;Farag TH;Panchalingam S;Antonio M;Hossain A;Mandomando I;Ochieng JB;Ramamurthy T;Tamboura B;Zaidi A;Levine MM;Kotloff K;Rasko DA;Nataro JP
• 通讯作者: Nataro JP

Combating enteropathogenic Escherichia coli (EPEC) infections: the way forward.

• DOI: 10.1016/j.tim.2013.05.003
• 发表时间: 2013-07
• 期刊: TRENDS IN MICROBIOLOGY
• 影响因子: 15.9
• 作者: Donnenberg, Michael S.;Finlay, B. Brett
• 通讯作者: Finlay, B. Brett

Draft Genome Sequences of Nine Enteropathogenic Escherichia coli Strains from Kenya.

来自肯尼亚的九种肠病性大肠杆菌菌株的基因组序列草案。

• DOI: 10.1128/genomea.00582-14
• 发表时间: 2014
• 期刊: Genome announcements
• 作者: Hazen,TracyH;Humphrys,MichaelS;Ochieng,JohnBenjamin;Parsons,Michele;Bopp,CherylA;O'Reilly,CiaraE;Mintz,Eric;Rasko,DavidA
• 通讯作者: Rasko,DavidA

Broad spectrum activity of a lectin-like bacterial serine protease family on human leukocytes.

• DOI: 10.1371/journal.pone.0107920
• 发表时间: 2014
• 期刊: PloS one
• 影响因子: 3.7
• 作者: Ayala-Lujan JL;Vijayakumar V;Gong M;Smith R;Santiago AE;Ruiz-Perez F
• 通讯作者: Ruiz-Perez F