Mechanism & Inhibition of Collagenolytic Activity

机制

• 批准号: 7185769
• 负责人: GREGG B FIELDS
• 金额: $ 29.52万
• 依托单位: FLORIDA ATLANTIC UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2003
• 资助国家: 美国
• 起止时间: 2003-03-05 至 2008-03-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7185769
• 关键词: Adamts5 protein; Affect; Amino Acid Sequence; Amino Acids; Arthritis; Back; Binding; Biological Assay; Cells; Circular Dichroism; Class; Classification; Cleaved cell; Collagen; Connective Tissue; Discrimination; Disease; Disintegrins; Drug Delivery Systems; Endopeptidases; Enzyme Interaction; Enzymes; Esters; Family; Gelatinase A; Gelatinase B; Generations; Goals; Hydrolysis; Individual; Interstitial Collagenase; Investigation; Kinetics; Knowledge; Label; Laboratories; Matrix Metalloproteinase Inhibitor; Matrix Metalloproteinases; Metalloproteases; Methodology; Methods; Modeling; Molecular Conformation; NMR Spectroscopy; Nature; Neoplasm Metastasis; Neutrophil Collagenase; Object Attachment; Peptide Hydrolases; Peptides; Phase; Phase III Clinical Trials; Play; Pliability; Range; Relative (related person); Reporting; Research; Role; Series; Site; Solid; Specificity; Stromelysin 1; Structure; Testing; Thermolysin; Thinking; Tissues; Trypsin; Tumor Cell Invasion; Vertebral column; aggrecanase; aggrecanase-1; analog; base; cathepsin K; collagenase 3; design; enzyme activity; feeding; human MMP14 protein; inhibitor/antagonist; matrix metalloproteinase 26; member; metalloenzyme; metastatic process; mutant; novel; novel strategies; phosphonate; programs; protein aminoacid sequence; research study; synthetic construct; synthetic protein; thermostability; triple helix; two-dimensional

DESCRIPTION (provided by applicant): The dissolution of the collagen triple-helix has been implicated in a variety of diseases that effect the structural integrity of various components of the body. Collagen also provides a barrier between tissues and cells; destruction of this barrier plays a role in tumor cell invasion and metastasis. The matrix metalloproteinase (MMP) family has been recognized for their collagenolytic activities, and has thus been the subject of intense research efforts, in order to elucidate their mechanisms of action and allow for rational design of inhibitors. We have developed methodology for constructing triple-helical peptides (THPs) and have applied these synthetic proteins for the study of enzyme interactions with collagens. "Triple-helical peptidase" activity was found to be more widespread amongst proteases than previously believed. It appears that the unique aspect of collagenolytic activity may not be the ability to cleave a triple-helix, but rather the ability to bind and orient the native collagen molecule properly. This paradigm shift could have significant effects on the design of inhibitors against collagenolytic activity. To further explore the nature of triple-helical peptidase activity, a series of THP substrates will be assembled, incorporating known sites of collagen hydrolysis and varying over a range of Tm values. Substrate thermal stability will be correlated to enzyme activity. In tandem, 2D NMR experiments using 15N-labeled amino acids will examine the mobilities of the peptide backbone in these substrates. Individual kinetic parameters and activation energies will be evaluated for MMP, trypsin, thermolysin, cathepsin K, and aggrecanase hydrolysis of THPs. MMP-1, MMP-2, MMP-8, and cathepsin K mutants will be utilized to determine the regions within these enzymes critical for triple-helical peptidase activity. Finally, selective THP substrates and novel THP inhibitors will be designed and tested. Overall, triple-helical peptidase activity will be systematically evaluated for a variety of proteases as a function of substrate sequence and conformational flexibility, and the mechanism of collagenolytic activity will better understood.

描述（由申请人提供）：胶原蛋白三螺旋的溶解与影响身体各部分结构完整性的多种疾病有关。胶原蛋白还提供组织和细胞之间的屏障；该屏障的破坏在肿瘤细胞侵袭和转移中发挥作用。基质金属蛋白酶 (MMP) 家族因其溶胶原活性而得到认可，因此成为深入研究的主题，以阐明其作用机制并允许合理设计抑制剂。我们开发了构建三螺旋肽 (THP) 的方法，并将这些合成蛋白质应用于酶与胶原蛋白相互作用的研究。发现“三螺旋肽酶”活性在蛋白酶中比以前认为的更广泛。似乎胶原蛋白溶解活性的独特之处可能不是裂解三螺旋的能力，而是正确结合和定向天然胶原分子的能力。这种范式转变可能会对胶原蛋白分解活性抑制剂的设计产生重大影响。为了进一步探索三螺旋肽酶活性的性质，将组装一系列 THP 底物，其中包含已知的胶原蛋白水解位点，并在一定范围内改变 Tm 值。底物热稳定性与酶活性相关。同时，使用 15N 标记氨基酸的 2D NMR 实验将检查这些底物中肽主链的迁移率。将评估 THP 的 MMP、胰蛋白酶、嗜热菌蛋白酶、组织蛋白酶 K 和聚集蛋白聚糖酶水解的单独动力学参数和活化能。 MMP-1、MMP-2、MMP-8 和组织蛋白酶 K 突变体将用于确定这些酶内对三螺旋肽酶活性至关重要的区域。最后，将设计和测试选择性 THP 底物和新型 THP 抑制剂。总体而言，将系统地评估各种蛋白酶的三螺旋肽酶活性作为底物序列和构象灵活性的函数，并且将更好地理解胶原蛋白溶解活性的机制。