Cellular and structural studies of the role of CD98:integrin complexes in fibrosis.

CD98：整合素复合物在纤维化中作用的细胞和结构研究。

• 批准号: 2436361
• 金额: --
• 依托单位: University of Leicester
• 依托单位国家: 英国
• 项目类别: Studentship
• 财政年份: 2020
• 资助国家: 英国
• 起止时间: 2020 至 无数据
• 项目状态: 已结题
• 来源: https://gtr.ukri.org/projects?ref=studentship-2436361
• 关键词: Cellular; structural; studies; role; CD98

(i) We shall investigate by immuno-histochemistry the formation of profibrotic cell surface complexes caused by misfolded mutants of A1AT (liver cells) or misfolded mutants of SP-C (lung cells). To probe the dependency of the cell's response to glycoprotein misfolding, we shall use WT cells and cells in which the gene encoding the ER glycoprotein folding checkpoint enzyme UGGT has been deleted;(ii) Mass spectrometry of co-immunoprecipitated complexes will be used to identify other interacting membrane proteins (Figure 1C) including the identity of the -integrin pairing with 1-integrin here;(iii) profibrotic cell surface complexes will be purified, in the absence and presence of LPS (modelling profibrotic 'exacerbation' stimulus) and their composition and stoichiometry characterised by mass-spectrometry and biochemical methods. The complexes will be reconstituted from recombinantly expressed components and purified; their structures will be studied by X-ray crystallography (with Dr Andrew Quigley, Harwell) and Cryo-EM (at the Midlands Cryo-EM Facility in Leicester).Expected outcomes: the molecular detail of the profibrotic complexes structure/function will be elucidated and their dependency on the ER glycoprotein folding machinery assessed.

(i) 我们将通过免疫组织化学研究由 A1AT（肝细胞）错误折叠突变体或 SP-C（肺细胞）错误折叠突变体引起的促纤维化细胞表面复合物的形成。为了探究细胞对糖蛋白错误折叠反应的依赖性，我们将使用WT细胞和编码ER糖蛋白折叠检查点酶UGGT的基因已被删除的细胞；（ii）免疫共沉淀复合物的质谱将用于鉴定其他相互作用的膜蛋白（图 1C），包括此处的 β-整合素与 1-整合素配对的身份；（iii）促纤维化细胞表面复合物将被纯化，在 LPS 不存在和存在的情况下（模拟促纤维化“恶化”刺激）及其通过质谱和生化方法表征的组成和化学计量。复合物将由重组表达的成分重建并纯化；它们的结构将通过 X 射线晶体学（与 Harwell 的 Andrew Quigley 博士一起）和 Cryo-EM（在莱斯特的 Midlands Cryo-EM 设施）进行研究。预期结果：将阐明促纤维化复合物结构/功能的分子细节以及它们对内质网糖蛋白折叠机制的依赖性的评估。

项目成果

Familial hypereosinophilia associated with eosinophilic gastrointestinal symptoms in individuals with a missense mutation in CKLF-like MARVEL transmembrane domain containing 3.

在含有 3 的 CKLF 样 MARVEL 跨膜结构域中存在错义突变的个体中，家族性嗜酸性粒细胞增多与嗜酸性胃肠道症状相关。

• DOI: http://dx.10.1111/cea.13957
• 发表时间: 2021
• 期刊: journal of the British Society for Allergy and Clinical Immunology
• 作者: Wardlaw AJ

Protein target highlights in CASP15: Analysis of models by structure providers.

CASP15 中的蛋白质目标亮点：结构提供者的模型分析。

• DOI: http://dx.10.1002/prot.26545
• 发表时间: 2023
• 期刊: Proteins
• 影响因子: 2.9
• 作者: Alexander LT

High-Throughput Production and Optimization of Membrane Proteins After Expression in Mammalian Cells.

哺乳动物细胞表达后膜蛋白的高通量生产和优化。

• DOI: http://dx.10.1007/978-1-0716-3147-8_5
• 发表时间: 2023
• 期刊: Methods in molecular biology (Clifton, N.J.)
• 作者: Gamage N