Systems Pharmacology for overcoming cell variability
克服细胞变异性的系统药理学
基本信息
- 批准号:10656377
- 负责人:
- 金额:$ 46.92万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2020
- 资助国家:美国
- 起止时间:2020-09-01 至 2024-06-30
- 项目状态:已结题
- 来源:
- 关键词:AblationAdultAgonistAnesthesia proceduresAxonBioinformaticsBiologicalBiological ModelsCNR1 geneCell modelCell physiologyCellsCharacteristicsClassificationClustered Regularly Interspaced Short Palindromic RepeatsColorCombination Drug TherapyCombined Modality TherapyComplexComputer ModelsCoupledCouplesDataDatabasesDevelopmentDiameterDiseaseDrug CombinationsDrug usageElectrophysiology (science)FiberFluorescent in Situ HybridizationFunctional disorderFundingGTP-Binding ProteinsGene ExpressionGenesGenetic TranscriptionGrantGrowthGrowth ConesHistologicIn VitroInjuryInterleukin 6 ReceptorInterleukin-6KineticsKnowledgeLengthLigandsLightLocationLogicMapsMeasuresMediatingMedicineMembraneMicrotubule StabilizationMicrotubulesModelingMolecularMonitorMorphologyMovementNatural regenerationNerve CrushNerve RegenerationNeuritesNeuronsOptic NerveOptic Nerve InjuriesOrganPaclitaxelPathway interactionsPharmaceutical PreparationsPharmacologyPharmacotherapyPhenotypePopulationPredispositionProteomicsRattusReceptor ActivationRecoveryRegulationRegulatory PathwayReproducibilityResearch Project GrantsRoleSTAT3 geneScienceSerine ProteaseSignal TransductionSiteSmall Interfering RNAStimulusSystemSystems BiologyTechnologyTestingTissuesTranscriptVesicleVisual Cortexactivated Protein Caxon regenerationcell typecellular targetingcollegedensitydesigndifferential expressionexperimental studygraph theoryin vivomRNA sequencingnerve injurynetwork modelsneurite growthpromoterreceptorresponserestorationsingle cell technologysingle-cell RNA sequencingsuccesssynergismtranscriptomicstreatment response
项目摘要
Project Summary:
Recent technological advances in single cell RNA-Seq have highlighted the possibility of a
hitherto unrecognized cell-to cell variability in many cell types across a wide range of tissues and
organs. Such variability results in the multiple subtypes of cells of a single type. This variability
results in differing cell biological capabilities, which has important consequences for drug therapy
for complex diseases. A systems pharmacology approach that takes into account variable
responses of the subtypes could be useful in development of effective combination therapy. Our
systems pharmacology approaches includes integration of computational modeling whereby we
combine graph theory and dynamical models to analyze single cell transcriptomic data so as to
identify relevant regulatory pathways and subnetworks involved in a model system that produces
a whole cell response to receptor stimulation which in vivo can play a role recovery from
pathophysiology in response to drugs. Based on these criteria we have been studying G protein
coupled cannabinoid 1 receptor regulated neurite outgrowth of primary neurons in vitro to identify
targetable nodes for combination drug therapy that can be tested to treat injury to the optic nerve
in rats in vivo. After injury, two receptor agonists drugs applied at the cell body and the two other
two drugs at the injury site restores light dependent electrophysiological signals in the visual
cortex. Although we see signal reliably in the visual cortex, the amplitude of restored signal is
small. We hypothesize that identifying genes responsible for long neurites in subtypes of cells
using single cell RNA-Seq will map cellular mechanisms to identify drugs for regeneration of
denser axonal bundles and lead to greater restoration of the light stimulated electrophysiological
signals in the visual cortex. To test this hypothesis we have three specific aims: 1) Will analyze
variability of single cell transcriptomic responses to receptor activation to identify the determinants
that control cells to put out long neurites in a population of cells. 2) Will use computational systems
biology to develop integrated network and dynamical models to identify the subcellular processes
and drugs that regulate the expression of up and downregulated genes in cells with long neurites.
3) Will use the optic nerve injury model in rats to test if neurite lengthening drugs along with or
substituting for the current four-drug combination results in increased density of regenerated
fibers and higher amplitude of the electrophysiological responses in the visual cortex. We
anticipate this will provide general fundamental understanding of the subcellular processes that
control cell-to cell variability in whole cell responses and how to use it for efficacious drug therapy.
项目摘要:
单细胞RNA-seq的最新技术进步强调了一种可能性
迄今为止在许多细胞类型中,尚未识别的细胞对细胞变异性在广泛的组织中的许多细胞类型和
器官。这种可变性导致单型细胞的多个亚型。这种变异性
导致不同的细胞生物学能力,这对药物治疗产生了重要的影响
对于复杂的疾病。考虑变量的系统药理学方法
亚型的反应对于开发有效的组合疗法可能很有用。我们的
系统药理学方法包括集成计算建模,我们
结合图理论和动态模型来分析单细胞转录组数据,以便
确定与产生模型系统有关的相关监管途径和子网
整个细胞对受体刺激的反应,体内可以从中扮演角色恢复
病理生理对药物的反应。基于这些标准,我们一直在研究G蛋白
偶联的大麻素1受体调节的原发性神经元的神经突在体外,以鉴定
可以测试以治疗视神经的损伤的组合药物治疗的有针对性节点
在体内的老鼠中。受伤后,两种受体激动剂药物在细胞体和其他两个
受伤部位的两种药物恢复了视觉中依赖光的电生理信号
皮质。尽管我们在视觉皮层中可靠地看到信号,但还原信号的幅度为
小的。我们假设识别细胞亚型中长神经突的基因
使用单细胞RNA-seq将绘制细胞机制,以识别用于再生的药物
浓密的轴突束,并导致更大的光刺激电生理学恢复
视觉皮层中的信号。为了检验这一假设,我们有三个具体目标:1)将分析
单细胞转录组对受体激活的可变性以识别决定因素
控制细胞在细胞群中发出长长的神经突。 2)将使用计算系统
生物学开发集成网络和动态模型以识别亚细胞过程
以及调节长神经突细胞中向上和下调基因表达的药物。
3)将在大鼠中使用视神经损伤模型来测试神经突加长药物以及OR
代替当前的四药组合导致再生的密度增加
视觉皮层中电生理反应的纤维和较高的振幅。我们
预计这将提供对亚细胞过程的一般基本理解
控制整个细胞反应中的细胞对细胞变异性以及如何将其用于有效的药物治疗。
项目成果
期刊论文数量(0)
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Srinivas Ravi V Iyengar其他文献
Srinivas Ravi V Iyengar的其他文献
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{{ truncateString('Srinivas Ravi V Iyengar', 18)}}的其他基金
Systems Pharmacology for overcoming cell variability
克服细胞变异性的系统药理学
- 批准号:
10437864 - 财政年份:2020
- 资助金额:
$ 46.92万 - 项目类别:
Systems Pharmacology for overcoming cell variability
克服细胞变异性的系统药理学
- 批准号:
10246261 - 财政年份:2020
- 资助金额:
$ 46.92万 - 项目类别:
Systems Pharmacology for overcoming cell variability
克服细胞变异性的系统药理学
- 批准号:
10810110 - 财政年份:2020
- 资助金额:
$ 46.92万 - 项目类别:
Mouse Models for Systems Therapeutics Degenerative Diseases
用于系统治疗退行性疾病的小鼠模型
- 批准号:
9244242 - 财政年份:2017
- 资助金额:
$ 46.92万 - 项目类别:
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