Beyond the reproductive tract: The future of Y chromosome research

超越生殖道：Y 染色体研究的未来

• 批准号: 9069025
• 负责人: Maximilian Muenke
• 金额: $ 46.24万
• 依托单位: WHITEHEAD INSTITUTE FOR BIOMEDICAL RES
• 依托单位国家: 美国
• 财政年份: 2015
• 资助国家: 美国
• 起止时间: 2015-05-18 至 2018-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9069025
• 关键词: Affect; Biological Process; Biology; Blood; Cells; ChIP-seq; Chromosome abnormality; Chromosomes, Human, Y; Clinical; Clinical Research; Complex; Defect; Disease; Ensure; Epigenetic Process; Etiology; Evaluation; Exhibits; Failure; Female; Future; Gender; Gene Expression Regulation; Genes; Genomic medicine; Genomics; Genotype; Health; Hereditary Disease; Histones; Homologous Gene; Human; Human Biology; Human Genetics; Individual; Institute of Medicine (U.S.); Knowledge; Laboratories; Lead; Light; Link; Lysine; Maps; Molecular; Noonan Syndrome; Patients; Pattern; Phenotype; Physiological; Play; Positioning Attribute; Predisposition; Prevalence; Production; RNA Splicing; Recruitment Activity; Recurrence; Regulator Genes; Reporting; Reproduction; Research; Resources; Role; Severities; Sex Bias; Sex Characteristics; Skin; Spermatogenesis; Structure; Testing; Testis; Transcript; Turner' s Syndrome; United States National Academy of Sciences; United States National Institutes of Health; Y Chromosome; base; body system; chromatin modification; defined contribution; design; dosage; epigenetic profiling; experience; genome-wide; human disease; insight; male; molecular phenotype; patient oriented; pressure; reproductive; reproductive tract; research clinical testing; sex; sex determination; sperm cell; transcription factor; transcriptome sequencing; treatment strategy; whole genome

DESCRIPTION (provided by applicant): The aims of this proposal are designed to uncover biological functions of the human Y chromosome beyond reproduction, which will have significant implications for human health and disease. Until now, Y chromosome research has focused solely on two functions: sex determination and sperm production. Our ongoing genomic studies of multiple mammalian Y chromosomes have revealed a set of broadly expressed, dosage sensitive regulatory genes that have been conserved on the Y chromosome. Because many of these broadly expressed genes likely have important and widespread biological functions, we hypothesize that the disruption of these genes may contribute to disease, especially Turner syndrome and diseases with sex-biased prevalence, susceptibility, or severity. Historically, deletion-mapping studies have focused solely on the Y chromosome's testis-specific genes, which are involved in sex determination and sperm production. We will perform the first systematic examination of phenotypes associated with disruption of the Y chromosome's broadly expressed genes by studying ~75 patients with Y-chromosome anomalies affecting one or more of these genes. We will evaluate phenotypes of patients using a combination of approaches: 1. At the NIH Clinical Center, patients will undergo a thorough examination of all major organ systems, including physical, reproductive, endocrinologic, and radiologic tests. We will characterize phenotypic abnormalities in patients, detecting patterns that correlate with particular Y-linked gene defects. Bringing patients to the Clinical Center ensures that all testing will be conducted in the most rigorous and systematic manner possible, thus allowing the identification of previously overlooked phenotypes. 2. In the Page lab, the cellular and molecular phenotypes of the same set of patients will be characterized using a combination of whole-genome approaches: RNA-seq and ChIP-seq. We will perform similar analyses in controls with intact Y chromosomes to identify perturbations in chromatin modification, transcript level, or splicing efficiently that may be linked to Y-chromosome defects. Through comprehensive phenotypic characterization, at molecular, cellular, anatomical, and physiological levels, of individuals with Y-chromosome anomalies, we can begin to understand the contribution of Y-linked genes to basic biological processes and fundamental differences between the sexes. Ultimately, these insights could lead to a greater appreciation of the etiology of Turner syndrome phenotypes and the underlying causes of sex biases in disease.

描述（由申请人提供）：该提案的目的旨在揭示人类Y染色体超出生殖的生物学功能，这将对人类健康和疾病产生重大影响。到目前为止，Y染色体研究仅关注两个功能：性别确定和精子产生。我们对多种哺乳动物Y染色体的持续基因组研究揭示了一组在Y染色体上保守的广泛表达的，剂量敏感的调节基因。由于这些广泛表达的基因中的许多可能具有重要且广泛的生物学功能，因此我们假设这些基因的破坏可能导致疾病，尤其是特纳综合征和具有性偏见的患病率，易感性或严重程度的疾病。从历史上看，缺失图研究仅集中在Y染色体的特异性基因上，这些基因与性别确定和精子产生有关。我们将通过研究〜75例影响其中一个或多个基因的Y染色体异常的患者，对Y染色体广泛表达的基因的中断相关的表型进行首次系统检查。我们将使用方法组合评估患者的表型：1。在NIH临床中心，患者将对所有主要的器官系统进行彻底检查，包括物理，生殖，内分泌学和放射学检查。我们将表征患者的表型异常，检测与特定Y连锁基因缺陷相关的模式。将患者带到临床中心确保将以最严格和系统的方式进行所有测试，从而识别先前被忽视的表型。 2。在页面实验室中，将使用全基因组方法组合来表征同一一组患者的细胞和分子表型：RNA-SEQ和CHIP-SEQ。我们将在具有完整Y染色体的对照中进行类似的分析，以识别有效的染色质修饰，转录物水平或剪接中的扰动，这些扰动可能与Y-chromosom体缺陷有关。 通过Y染色体异常的个体的分子，细胞，解剖和生理水平的全面表型表征，我们可以开始了解性别之间的Y连锁基因对基本生物学过程和基本差异的贡献。最终，这些见解可能会导致对特纳综合征表型的病因和疾病性别偏见的根本原因更加欣赏。