The role of RNA in centromere chromatin

RNA在着丝粒染色质中的作用

基本信息

批准号：
8307031
负责人：
Jonathan Isaiah Gent
金额：
$ 5.39万
依托单位：
UNIVERSITY OF GEORGIA
依托单位国家：
美国
项目类别：
财政年份：
2010
资助国家：
美国
起止时间：
2010-08-01 至 2013-07-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8307031
关键词：
Aneuploidy Area Base Sequence Binding Biology Cell division Cells Cellular Structures Centromere Chromatin Chromosomes Complement Complex DNA Sequence Defect Detection Dicentric chromosome Environment Epigenetic Process Gene Expression Profile Generations Genes Genetic Genetic Screening Genetic Transcription Goals Health Human Investigation Kinetochores Knowledge Lead Maize Maps Methods Microtubules Modern Medicine Molecular Organism Plant Model Plants Play Population Proteins RNA RNA Binding RNA Sequences RNA library Reagent Regulation Reporting Research Resources Reverse Transcriptase Polymerase Chain Reaction Role Site Specific qualifier value Specificity Surveys System Testing Work base design deviant expectation experience gene therapy high throughput screening human disease mutant novel public health relevance research study transmission process

项目摘要

DESCRIPTION (provided by applicant): At a superficial level, the concept of a centromere is straightforward: the part of a chromosome that provides a favorable chromatin environment for kinetochore assembly and microtubule attachments during cell division. At a molecular level, however, the concept of a centromere is quite murky and involves a complex interaction between genetic and epigenetic factors. While in many organisms centromeres have been mapped to specific genetic loci and many of their protein components identified, fundamental questions about what regulates centromere identity and function remain unanswered. Recent evidence suggests that RNA plays an important role in centromere chromatin. The central goal of this proposed research is to understand the contribution of chromatin-associated RNA to centromere regulation and function. We have chosen to use the model plant species maize for the proposed experiments because of its unique advantages in studying centromere biology and because of the availability of resources and reagents tailored to our needs. In particular, maize is unrivaled for cytological analysis, provides multiple examples of epigenetic centromere deviants, and has the distinction of being the first organism in which chromatin-bound centromere RNA was detected. The following specific aims will make use of a number of complementary experimental approaches, but will rely substantially on our strengths and experience with characterization of diverse RNA populations through deep sequencing. 1) Survey and characterization of the centromere RNAome, 2) Delineation of the rules-of-engagement for RNA in centromere chromatin, and 3) Identification of novel centromere regulatory factors. We anticipate that this work will lead towards progress in several important areas of research connected to human health including causes of aneuploidy and relation to human disease, rational design of minichromosomes for gene therapy, and understanding of complex heritable epigenetic phenomena (based on the knowledge gained from the exemplary and easily tractable system provided by centromeres). PUBLIC HEALTH RELEVANCE: Modern medicine has greatly benefitted from scientific investigation into the molecular details of the cell and the genes that encode each component. What we hope to gain through our proposed research is a clearer understanding of the centromere, a fundamental cellular structure that is essential for accurate and reliable transmission of genes from one generation to the next. )

描述（由申请人提供）：从表面上看，着丝粒的概念很简单：染色体的一部分，在细胞分裂过程中为着丝粒组装和微管附着提供有利的染色质环境。然而，在分子水平上，着丝粒的概念相当模糊，涉及遗传因素和表观遗传因素之间复杂的相互作用。虽然在许多生物体中，着丝粒已被定位到特定的遗传位点，并且其许多蛋白质成分已被识别，但关于什么调节着丝粒身份和功能的基本问题仍未得到解答。最近的证据表明 RNA 在着丝粒染色质中发挥着重要作用。这项研究的中心目标是了解染色质相关 RNA 对着丝粒调节和功能的贡献。我们选择使用模型植物物种玉米进行拟议的实验，因为它在研究着丝粒生物学方面具有独特的优势，并且可以根据我们的需求定制资源和试剂。特别是，玉米在细胞学分析方面是无与伦比的，提供了多个表观遗传着丝粒变异的例子，并且是第一个检测到染色质结合着丝粒 RNA 的生物体。以下具体目标将利用许多互补的实验方法，但将在很大程度上依赖于我们通过深度测序表征不同 RNA 群体的优势和经验。 1) 着丝粒 RNA 组的调查和表征，2) 描述着丝粒染色质中 RNA 的结合规则，3) 识别新的着丝粒调控因子。我们预计这项工作将在与人类健康相关的几个重要研究领域取得进展，包括非整倍性的原因和与人类疾病的关系、用于基因治疗的微型染色体的合理设计以及对复杂的可遗传表观遗传现象的理解（基于所获得的知识）来自着丝粒提供的示例性且易于处理的系统）。公共健康相关性：现代医学极大地受益于对细胞分子细节和编码每个成分的基因的科学研究。我们希望通过我们提出的研究获得对着丝粒的更清晰的了解，着丝粒是一种基本的细胞结构，对于基因从一代到下一代的准确可靠的传递至关重要。）

项目成果

期刊论文数量（5）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

RNA as a structural and regulatory component of the centromere.

RNA 作为着丝粒的结构和调节成分。

DOI：
发表时间：
2012
期刊：
影响因子：
0
作者：
Gent, Jonathan I;Dawe, R Kelly
通讯作者：
Dawe, R Kelly

Strong epigenetic similarity between maize centromeric and pericentromeric regions at the level of small RNAs, DNA methylation and H3 chromatin modifications.

玉米着丝粒和着丝粒周围区域在小 RNA、DNA 甲基化和 H3 染色质修饰水平上具有很强的表观遗传相似性。

DOI：
发表时间：
2012-02
期刊：
影响因子：
14.9
作者：
Gent, Jonathan I;Dong, Yuzhu;Jiang, Jiming;Dawe, R Kelly
通讯作者：
Dawe, R Kelly

Spreading of heterochromatin is limited to specific families of maize retrotransposons.

异染色质的传播仅限于玉米反转录转座子的特定家族。

DOI：
发表时间：
2012
期刊：
影响因子：
4.5
作者：
Eichten, Steven R;Ellis, Nathanael A;Makarevitch, Irina;Yeh, Cheng;Gent, Jonathan I;Guo, Lin;McGinnis, Karen M;Zhang, Xiaoyu;Schnable, Patrick S;Vaughn, Matthew W;Dawe, R Kelly;Springer, Nathan M
通讯作者：
Springer, Nathan M

CHH islands: de novo DNA methylation in near-gene chromatin regulation in maize.

CHH 岛：玉米近基因染色质调控中的从头 DNA 甲基化。

DOI：
发表时间：
2013-04
期刊：
影响因子：
7
作者：
Gent, Jonathan I;Ellis, Nathanael A;Guo, Lin;Harkess, Alex E;Yao, Yingyin;Zhang, Xiaoyu;Dawe, R Kelly
通讯作者：
Dawe, R Kelly

Accessible DNA and relative depletion of H3K9me2 at maize loci undergoing RNA-directed DNA methylation.

在经历 RNA 指导的 DNA 甲基化的玉米基因座上，可接近的 DNA 和 H3K9me2 的相对消耗。

DOI：
发表时间：
2014-12
期刊：
影响因子：
0
作者：
Gent, Jonathan I;Madzima, Thelma F;Bader, Rechien;Kent, Matthew R;Zhang, Xiaoyu;Stam, Maike;McGinnis, Karen M;Dawe, R Kelly
通讯作者：
Dawe, R Kelly