Correlative cryo-microscopy: a new approach for characterizing the structure and

相关冷冻显微镜：一种表征结构和特征的新方法

基本信息

批准号：
8118885
负责人：
JAMES M HOGLE
金额：
$ 33.23万
依托单位：
HARVARD MEDICAL SCHOOL
依托单位国家：
美国
项目类别：
财政年份：
2008
资助国家：
美国
起止时间：
2008-08-01 至 2013-07-31
项目状态：
已结题

项目摘要

DESCRIPTION (provided by applicant): The macromolecular machines of cells pose structural questions that span over six orders of magnitude in scale from the tenths of nanometers (atoms) to tens of microns (cells). This large range of scale exceeds the capabilities of any one technique. As a result, structural biologists have increasingly turned to the use of hybrid approaches. For example, the combination of x-ray crystallography and cryoelectron microscopy has been widely used to probe the structure and mechanics of large complexes (e.g. viruses, ribosomes, proteosomes, chaperones, actin filaments and microtubules) in vitro at the near atomic level. In this project we will explore technologies to link these first generation hybrid techniques, single molecule optical microscopy, and cryoelectron tomography to characterize the structure and function of macromolecular complexes in the context of the whole cell. The technologies that will be developed include the use of optical imaging methods to characterize the functional state of macromolecular complexes in cells imbedded in vitreous ice and determine their location with very high precision (tens of nm), development of a cold stage that will permit the optical positional mapping to be transferred to the electron microscope, development of computational tools to locate, identify, and determine the structures of macromolecular complexes in cryoelectron tomographic reconstructions, and refinement of computational tools to match these structures with higher resolution structures derived from conventional in vitro methods. In our initial studies we will use the new technologies to characterize the cell entry pathway of poliovirus. This model was chosen because of its biological relevance (the cell entry mechanisms of nonenveloped viruses are poorly understood) and because structures of several relevant cell entry intermediates in vitro are already known. The techniques developed will be generally applicable to a wide range of macromolecular complexes. In this project will develop technologies that will combine fluorescence optical microscopy and cryoelectron tomography to characterize the structure and function of intracellular macromolecular assemblies at the molecular level in situ. The technology will be relevant to a wide range of intracellular structures, and will add significantly to our basic understanding of the structure and function of "cellular machines."

描述（由申请人提供）：细胞的大分子机器提出了结构问题，其尺度从十分之几纳米（原子）到几十微米（细胞）跨越六个数量级。这种大范围的规模超出了任何一种技术的能力。因此，结构生物学家越来越多地转向使用混合方法。例如，X射线晶体学和冷冻电子显微镜的结合已被广泛用于在近原子水平的体外探测大型复合物（例如病毒、核糖体、蛋白质体、分子伴侣、肌动蛋白丝和微管）的结构和力学。在这个项目中，我们将探索将第一代混合技术、单分子光学显微镜和冷冻电子断层扫描联系起来的技术，以表征全细胞背景下大分子复合物的结构和功能。将开发的技术包括使用光学成像方法来表征玻璃体冰中嵌入的细胞中大分子复合物的功能状态，并以非常高的精度（数十纳米）确定它们的位置，开发一个冷阶段，允许将光学位置测绘转移到电子显微镜，开发计算工具来定位、识别和确定冷冻电子断层扫描重建中大分子复合物的结构，以及改进计算工具以将这些结构与更高分辨率的结构相匹配源自传统的体外方法。在我们的初步研究中，我们将使用新技术来表征脊髓灰质炎病毒的细胞进入途径。选择该模型是因为其生物学相关性（无包膜病毒的细胞进入机制知之甚少），并且因为体外几种相关细胞进入中间体的结构已知。所开发的技术将普遍适用于各种大分子复合物。在该项目中，将开发结合荧光光学显微镜和冷冻电子断层扫描的技术，以在分子水平上原位表征细胞内大分子组装体的结构和功能。该技术将与广泛的细胞内结构相关，并将显着增强我们对“细胞机器”的结构和功能的基本理解。