Conformations of Biomolecules by Advanced Electron Paramagnetic Resonance Methods

通过先进的电子顺磁共振方法测定生物分子的构象

• 批准号: 0843632
• 负责人: Tatyana Smirnova
• 金额: $ 69.99万
• 依托单位: North Carolina State University
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-04-01 至 2015-03-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0843632&HistoricalAwards=false
• 关键词: Conformations; Biomolecules; Advanced; Electron; Paramagnetic

Intellectual merit. This project is aimed at expanding the arsenal of Electron Paramagnetic Resonance (EPR) and, especially, high resolution high field (HF) EPR methods by developing novel experimental capabilities to study fundamental roles of intermolecular interactions in self-assembly and structure-function relationships in multi component biological systems. Specific emphasis will be put on elucidating lipid-protein interactions for the Sec14 protein family. During the preceding phase of this NSF-funded project, an HF EPR-based method to separate two major components of solvent effects on spin-labeled protein residues and to detect hydrogen bond formation and local electrostatic effects was developed. While the general concepts of membrane protein folding and thermodynamic stability are beginning to emerge, the arsenal of experimental spectroscopic methods for assessing local protein electrostatics and local hydrogen bonding interactions remains severely limited. This research project aims at further developing spin-labeling HF EPR and double-resonance methods for mapping the hydrogen bonding environment for protein systems without the necessity of preparing high quality crystals. The method relies on incorporating small molecular tags, based on nitroxide radicals, into the protein structure. These labels have molecular volume and structure similar to the native protein side chain and, therefore, are known to cause only minimal perturbation to the tertiary structure. The main advantage of such labels lies in the sensitivity of their EPR spectra to the local electrostatic environment and hydrogen bond formation resulting in essential biophysical data that are difficult to obtain otherwise. The sensitivity of nitroxide spin labels to local electrostatics and hydrogen bonding is further enhanced by high field and double-resonance EPR methods under development. These methods will be further refined during this project to elucidate an intriguing and largely unknown molecular mechanism by which the Sec14 protein and its analogs regulate the interface between phospholipid metabolism and membrane trafficking. Spin label EPR and a complementary array of biophysical methods will be used to study how Sec14 recognizes, binds and transports phopholipids and how it interacts with phospholipid membranes.Broader impact. The methods developed in the course of this project will fill the gap in the existing experimental capabilities of EPR and enable detailed biophysical studies of local electrostatics and hydrogen bonding that are directly involved in structure-function relationships of many biological systems of contemporary interest - from model membranes and peptides to ion channels, transporters and G-protein coupled receptors. The project will integrate research and teaching by adding research-driven experimental tasks to a largely lecture course "Physical Methods in Biological Chemistry" developed by the PI. In the course of this project graduate and undergraduate students will be trained across several disciplines including biophysical spectroscopy, chemical synthesis and methods of molecular biology. The project will expand research opportunities for undergraduate students, especially, minority students through the Alliances for Graduate Education and the Professoriate (AGEP) and Research Experience for Undergraduates (REU) programs. In an effort to reach out to undergraduate colleges in rural North Carolina, the PI will continue collaboration with the University of North Carolina-Pembroke. The PI and her group will be engaged in science projects and demonstrations in the Centennial Middle School associated with NCSU that will be coordinated through the Science House, a North Carolina institution for K-12 outreach program.

智力上的优点。 该项目旨在通过开发新的实验能力来研究分子间相互作用在自组装和结构功能关系中的基本作用，从而扩大电子顺磁共振（EPR）的武库，特别是高分辨率高场（HF）EPR方法。多组分生物系统。 将特别强调阐明 Sec14 蛋白家族的脂质-蛋白相互作用。在这个 NSF 资助的项目的前一阶段，开发了一种基于 HF EPR 的方法，用于分离自旋标记蛋白质残基上溶剂效应的两个主要成分，并检测氢键形成和局部静电效应。 虽然膜蛋白折叠和热力学稳定性的一般概念开始出现，但用于评估局部蛋白质静电和局部氢键相互作用的实验光谱方法仍然受到严重限制。 该研究项目旨在进一步开发自旋标记 HF EPR 和双共振方法，用于绘制蛋白质系统的氢键环境，而无需制备高质量晶体。 该方法依赖于将基于氮氧自由基的小分子标签整合到蛋白质结构中。 这些标记的分子体积和结构与天然蛋白质侧链相似，因此已知仅对三级结构造成最小的扰动。 此类标签的主要优点在于其 EPR 光谱对局部静电环境和氢键形成的敏感性，从而产生难以获得的重要生物物理数据。 正在开发的高场和双共振 EPR 方法进一步增强了硝基氧自旋标记对局部静电和氢键的敏感性。 这些方法将在该项目中得到进一步完善，以阐明 Sec14 蛋白及其类似物调节磷脂代谢和膜运输之间界面的有趣且很大程度上未知的分子机制。自旋标记 EPR 和一系列互补的生物物理方法将用于研究 Sec14 如何识别、结合和运输磷脂以及它如何与磷脂膜相互作用。产生更广泛的影响。该项目过程中开发的方法将填补 EPR 现有实验能力的空白，并能够对直接涉及当代感兴趣的许多生物系统的结构功能关系的局部静电和氢键进行详细的生物物理研究 - 从模型膜和肽与离子通道、转运蛋白和 G 蛋白偶联受体。 该项目将通过在 PI 开发的主要讲座课程“生物化学中的物理方法”中添加研究驱动的实验任务来整合研究和教学。在该项目过程中，研究生和本科生将接受多个学科的培训，包括生物物理光谱学、化学合成和分子生物学方法。 该项目将通过研究生教育和教授联盟（AGEP）和本科生研究经验（REU）项目扩大本科生，特别是少数族裔学生的研究机会。 为了接触北卡罗来纳州农村地区的本科院校，PI 将继续与北卡罗来纳大学彭布罗克分校合作。 PI 和她的团队将在与 NCSU 相关的 Centennial 中学参与科学项目和演示，这些项目和演示将通过北卡罗来纳州 K-12 推广计划机构 Science House 进行协调。