Comprehensive Database System for Modern MALDI- TOF and TOF-TOF MS and MS-MS

现代 MALDI-TOF 和 TOF-TOF MS 和 MS-MS 的综合数据库系统

• 批准号: 7907124
• 负责人: MARVIN L VESTAL
• 金额: $ 10.6万
• 依托单位: VIRGIN INSTRUMENTS CORPORATION
• 依托单位国家: 美国
• 财政年份: 2010
• 资助国家: 美国
• 起止时间: 2010-05-15 至 2010-11-14
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7907124
• 关键词: Address; Amino Acids; Archives; Bioinformatics; Biological; Biological Markers; Brain; Campylobacter; Chemicals; Complex; Complex Mixtures; Computer software; Consensus; Coupled; Data; Databases; Detection; Development; Diagnosis; Digestion; Disease; Electrospray Ionization; Enzymes; Family; Fingerprint; Fractionation; Genes; Goals; Health; Human; Human Genome; Human Genome Project; Ions; Isotopes; Label; Lipids; Liquid Chromatography; Liver; Maps; Measurement; Modeling; Modification; Molecular Weight; Organ; Organism; Peptides; Performance; Phase; Plasma; Population; Post-Translational Protein Processing; Prevention; Process; Proteins; Proteome; Proteomics; Relative (related person); Reproducibility; Research; Resolution; Route; Sampling; Sensitivity and Specificity; Serum; Set protein; Source; Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization; Speed; Structure; System; Technology; Testing; Tissues; Trypsin; Validation; Work; analog; analytical method; analytical tool; biological systems; cancer therapy; database structure; design; improved; instrument; mass spectrometer; metabolomics; multiple reaction monitoring; novel; pathogen; practical application; professor; protein aminoacid sequence; public health relevance; research study; response; small molecule; tool; virtual

DESCRIPTION (provided by applicant): Our research is focused on developing integrated systems that provide analytical tools needed for truly global analyses of biological systems. The approach employs multi-dimensional separations coupled to high- performance MALDI TOF mass spectrometers via new three-dimensional sample plates using collimated hole structures (CHS) and monolithic supports as an alternative to established LC-MS-MS systems employing electrospray ionization. Recent advances in high performance ion trap mass spectrometers employing electrospray ionization and nanoflow liquid chromatography have significantly improved capabilities for analyzing biological samples, but this technology has serious inherent limitations on dynamic range and speed. Early applications of MALDI were limited by relatively low resolving power and mass accuracy of available TOF instruments, and the lack of a commonly available interface with liquid chromatography. Our recent work has overcome these limitations and high performance MALDI-TOF and TOF-TOF instruments interfaced with high capacity separations are now available. These instruments provide speed, resolution, dynamic range, and sensitivity orders of magnitude superior to the performance of commercially available instruments. These instruments and interfaces provide the performance required for global analysis of biological samples, but the database and bioinformatics tools proposed for development in this project are essential for converting this massive volume of data to useful information. Although global proteomics is clearly much more challenging than sequencing the human genome, the technology developed in this and related projects will provide the tools required for significant progress in the proteomics analog to the human genome project. The major remaining challenge involves converting the massive volume of data than can be produced by these instruments into information that can be readily used to address biological problems. This is the focus of the proposed project. PUBLIC HEALTH RELEVANCE: Major initiatives by The Human Proteome Organization are focused on plasma, liver, and brain proteomics. The premise of these initiatives is that "A comprehensive, systematic characterization of circulating proteins in health and disease will greatly facilitate development of biomarkers for prevention, diagnosis, and therapy of cancer and other diseases." This project will demonstrate that the technology described in this proposal provides a feasible route to achieving the goals of these initiatives.

描述（由申请人提供）：我们的研究重点是开发集成系统，这些系统提供了真正的全球生物系统分析所需的分析工具。该方法采用多维分离，通过新的三维样品板使用准直的孔结构（CHS），与高性能MALDI TOF质谱仪结合使用，并单层支持用作既有既定的LC-MS-MS MS系统，均采用电源电离。使用电喷雾电离和纳米液相色谱法的高性离子陷阱质谱仪的最新进展显着提高了分析生物样品的能力，但是该技术对动态范围和速度有严重的固有局限性。 MALDI的早期应用受到相对较低的分辨能力和可用TOF仪器的质量准确性的限制，并且缺乏具有液相色谱法的常见接口。我们最近的工作已经克服了这些局限性，并且现在可以使用高能分离的高性能MALDI-TOF和TOF-TOF仪器。这些仪器提供的速度，分辨率，动态范围和灵敏度顺序优于市售仪器的性能。这些仪器和接口提供了对生物样品进行全球分析所需的性能，但是在本项目中提出的用于开发的数据库和生物信息学工具对于将大量数据转换为有用信息至关重要。尽管与对人类基因组进行测序相比，全球蛋白质组学显然更具挑战性，但相关项目中开发的技术将为人类基因组项目的蛋白质组学类似物提供重大进展所需的工具。剩余的主要挑战涉及将大量数据转换为这些仪器所能产生的信息，这些信息可以很容易地用于解决生物学问题。这是拟议项目的重点。 公共卫生相关性：人类蛋白质组组织的主要举措侧重于血浆，肝脏和脑蛋白质组学。 这些举措的前提是“健康和疾病中循环蛋白的全面，系统的表征将极大地促进生物标志物的开发，以预防癌症和其他疾病的预防，诊断和治疗。”该项目将表明，本提案中描述的技术为实现这些计划的目标提供了可行的途径。