"Gdf6 gene expression and evolution in vertebrates"

“Gdf6 基因在脊椎动物中的表达和进化”

基本信息

批准号：
7929967
负责人：
DOUGLAS P MORTLOCK
金额：
$ 5.94万
依托单位：
VANDERBILT UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2009
资助国家：
美国
起止时间：
2009-09-30 至 2010-09-29
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/7929967
关键词：
Address Animal Model Architecture Bone Morphogenetic Proteins Branchial arch structure Cartilage Comparative Study Complex Congenital Abnormality Conserved Sequence Control Locus DNA DNA Sequence Data Set Development Digit structure Ear Elements Embryo Embryonic Pattern Specification Engineering Enhancers Evolution Fishes Gene Expression Gene Family Genes Genetic Genetic Transcription Genomics Health Heart Human Human Development In Situ Hybridization Individual Intercistronic Region Jaw Joints LacZ Genes Larynx Ligands Limb Development Limb structure Link Location Mammals Maps Modeling Molecular Morphology Mus Names Nucleic Acid Regulatory Sequences Orthologous Gene Pattern Play Protein Family Radar Regulation Regulator Genes Regulatory Element Reporter Research Personnel Role Scanning Sequence Analysis Sequence Homology Signal Pathway Signal Transduction Signaling Molecule Signaling Pathway Gene Site Skeletal Development Structure Surgical sutures Testing Tissues Transgenic Mice Transgenic Organisms Vertebral column Vertebrates Zebrafish bone comparative cranium insight limb bone malformation member middle ear mouse development novel paralogous gene programs promoter research study skeletal

项目摘要

DESCRIPTION (provided by applicant): Genes that play roles in embryonic pattern formation and developmental signaling pathways are likely to contain many genomic cis-regulatory sequences that must function properly to allow normal development. The study of such genes and regulatory sequences that control their expression will further our understanding of the function of genomic regulatory DNA in human development and of genetic factors underlying congenital defects in humans. Therefore, the PIs propose to analyze the regulatory architecture of the vertebrate Gdf6 genes. Gdf6 is a member of the BMP signaling factor gene family, which encodes many signaling ligands required for vertebrate skeletal patterning and development. In mouse, Gdf6 is important for normal development of limb, ear, skull and spine skeletal joints, the larynx, and potentially other structures including the heart. These structures have been differently modified during evolution of mammals and fish, so it is unclear to what extent Gdf6 cis-regulatory sequences are conserved across species. However, the extent to which sequence conservation generally correlates with conserved function is also unclear, especially with regard to noncoding regulatory DNA. Here we propose to definitively address the expression and regulation of orthologs for Gdf6, an important skeletal patterning gene, during mouse and zebrafish skeletal development. Using transgenic approaches, they will compare the modular structure of functionally similar and dissimilar Gdf6 cis-regulatory elements in both species, and identify novel long-range genomic regulatory elements controlling Gdf6 expression in developing limb joints, skull sutures, jaw and ear bones, and laryngeal structures. The PIs will correlate the degree of cross-species conservation in individual cis-acting regions with potential for regulatory function, by testing a large data set of candidate regulatory sequences. This will provide a comprehensive "scan" of a large, well-characterized genomic locus for regulatory sequences that impact skeletal development. These experiments will provide extensive insights into the conservation of this important signaling pathway gene in different animal models and the role genomic sequences play in normal skeletal patterning.

描述（由申请人提供）：在胚胎模式形成和发育信号通路中发挥作用的基因可能包含许多基因组顺式调控序列，这些序列必须正常发挥作用以允许正常发育。对此类基因和控制其表达的调控序列的研究将进一步加深我们对基因组调控DNA在人类发育中的功能以及人类先天性缺陷背后的遗传因素的理解。因此，PI 建议分析脊椎动物 Gdf6 基因的调控结构。 Gdf6 是 BMP 信号因子基因家族的成员，该家族编码脊椎动物骨骼模式和发育所需的许多信号配体。在小鼠中，Gdf6 对于四肢、耳朵、头骨和脊柱骨骼关节、喉以及包括心脏在内的其他潜在结构的正常发育非常重要。这些结构在哺乳动物和鱼类的进化过程中发生了不同的修饰，因此尚不清楚 Gdf6 顺式调控序列在物种间的保守程度。然而，序列保守性与保守功能的关联程度尚不清楚，特别是对于非编码调控 DNA 而言。在这里，我们建议明确解决 Gdf6（一种重要的骨骼模式基因）直系同源物在小鼠和斑马鱼骨骼发育过程中的表达和调节。使用转基因方法，他们将比较两个物种中功能相似和不相似的 Gdf6 顺式调控元件的模块结构，并鉴定控制发育中的四肢关节、颅骨缝合线、下颌骨和耳骨中 Gdf6 表达的新型远程基因组调控元件，以及喉部结构。通过测试候选调控序列的大数据集，PI 将把各个顺式作用区域的跨物种保守程度与调控功能的潜力联系起来。这将对大型、特征明确的基因组位点进行全面的“扫描”，以寻找影响骨骼发育的调控序列。这些实验将为不同动物模型中这一重要信号通路基因的保护以及基因组序列在正常骨骼模式中发挥的作用提供广泛的见解。