Solid-state NMR of influenza M2 protein in lipid bilayers

脂质双层中流感 M2 蛋白的固态 NMR

• 批准号: 7939909
• 负责人: Mei Hong
• 金额: $ 27.75万
• 依托单位: IOWA STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2009
• 资助国家: 美国
• 起止时间: 2009-09-30 至 2012-07-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7939909
• 关键词: Address; Amantadine; Amantadine resistance; Amines; Antiviral Agents; Binding; Binding Proteins; Binding Sites; Cells; Chemicals; Complex; Data; Detergents; Diffusion; Drug Binding Site; Drug resistance; Elements; Environment; Funding; Future; Goals; Heterogeneity; Influenza; Influenza A virus; Investigation; Lipid Bilayers; M2 protein; Magic; Measures; Membrane; Membrane Lipids; Methods; Molecular Conformation; Mutation; NMR Spectroscopy; Nuclear; Peptides; Pharmaceutical Preparations; Physiological; Proteins; Protons; Relaxation; Reporting; Resistance; Resolution; Rimantadine; Roentgen Rays; Sampling; Site; Solutions; Structure; Techniques; Temperature; Testing; Time; Transmembrane Domain; Vertebral column; Viral; Virus; Virus Diseases; Work; X-Ray Crystallography; base; cold temperature; design; flexibility; inhibitor/antagonist; mutant; pandemic influenza; peptide structure; prevent; research study; solid state nuclear magnetic resonance; viral RNA

DESCRIPTION (provided by applicant): The M2 protein of influenza A virus forms a pH-gated proton channel that is important for viral infection and replication. The antiviral drug amantadine used to be effective in blocking this channel, until the recent emergence of a mutant, S31N, of the M2 transmembrane domain rendered the viruses completely resistant. The high- resolution structure of the M2 transmembrane peptide (M2TMP) is recently determined by X-ray crystallography and solution NMR. However, the two structures concluded dramatically different drug binding sites and noticeably different helix orientations and sidechain conformations. Since the X-ray and solution NMR structures were solved in detergents, these differences urge for high-resolution structural investigations in the more biologically relevant environment of lipid bilayers. Elucidation of the atomic-level structure of this important proton channel will help to develop new inhibitors to prevent future influenza pandemics. The broad, long-term objective of this work is to elucidate the structure and dynamics of the M2 protein in lipid bilayers in many of its functional states using solid- state NMR spectroscopy. We wish to understand how M2 conducts protons, how drug molecules block the channel, and how site-specific mutations alter the structure to evade drug binding. In the first funding period, we will focus on the transmembrane domain of the protein, and characterize the apo M2TMP in the closed state (high pH), the drug-complexed peptide in the closed state, and the apo peptide in the open state (low pH). We will also investigate the structure of the main amantadine-resistant mutant, S31N-M2TMP, and compare it with the structure of the wild-type peptide. Our main method is high-resolution magic-angle spinning (MAS) solid-state NMR, which allows atomic-resolution structural information to be obtained from unoriented hydrated lipid membrane samples. Based on our preliminary data, we hypothesize that a key element of M2TMP is its conformational flexibility, which is manifested as drug- and pH-induced backbone and sidechain conformational changes, mobility changes, and membrane-induced helix orientation changes. We will test this general hypothesis by measuring chemical shift perturbations, 13C and 15N linewidths, nuclear spin relaxation times, and the helix orientation in various states of the peptide. Experiments at physiological temperature will characterize the dynamic conformational fluctuations of the peptide, while low-temperature experiments will yield the average conformation and conformational distribution. We will further determine intermolecular distances between the drug and the peptide using both quantitative dipolar recoupling experiments and semi-quantitative spin diffusion techniques. Our goal is to obtain a high-resolution structure of bilayer-bound M2TMP with both backbone and sidechain constraints, and to elucidate the structural differences due to drug binding pH change, and mutation. PUBLIC HEALTH RELEVANCE: Atomic-resolution structure determination of the M2 protein of influenza A viruses in lipid bilayers is directly relevant to treating influenza infection and preventing future flu pandemics in the US and worldwide. The high-resolution structural information will be crucial for the design of new antiviral drugs to target the drug-resistant mutant proton channel, S31N-M2 in influenza A viruses.

描述（申请人提供）：甲型流感病毒的M2蛋白形成pH门控质子通道，这对于病毒感染和复制很重要。抗病毒药物金刚烷胺曾经可以有效阻断该通道，直到最近出现的 M2 跨膜结构域突变体 S31N 使病毒完全具有抵抗力。最近通过 X 射线晶体学和溶液 NMR 确定了 M2 跨膜肽 (M2TMP) 的高分辨率结构。然而，这两种结构得出了显着不同的药物结合位点以及显着不同的螺旋方向和侧链构象。由于 X 射线和溶液 NMR 结构是在洗涤剂中解析的，因此这些差异迫切需要在更具生物学相关性的脂质双层环境中进行高分辨率结构研究。阐明这一重要质子通道的原子级结构将有助于开发新的抑制剂来预防未来的流感大流行。这项工作的广泛、长期目标是利用固态核磁共振波谱阐明脂质双层中 M2 蛋白在许多功能状态下的结构和动力学。我们希望了解 M2 如何传导质子、药物分子如何阻断通道以及位点特异性突变如何改变结构以逃避药物结合。在第一个资助期内，我们将重点关注蛋白质的跨膜结构域，并表征封闭状态（高pH）的apo M2TMP、封闭状态的药物复合肽和开放状态的apo肽（低 pH 值）。我们还将研究主要的金刚烷胺抗性突变体S31N-M2TMP的结构，并将其与野生型肽的结构进行比较。我们的主要方法是高分辨率魔角旋转（MAS）固态核磁共振，它可以从非定向水合脂质膜样品中获得原子分辨率的结构信息。根据我们的初步数据，我们假设 M2TMP 的一个关键要素是其构象灵活性，这表现为药物和 pH 诱导的主链和侧链构象变化、迁移率变化以及膜诱导的螺旋方向变化。我们将通过测量化学位移扰动、13C 和 15N 线宽、核自旋弛豫时间以及肽不同状态下的螺旋方向来测试这一一般假设。生理温度下的实验将表征肽的动态构象波动，而低温实验将产生平均构象和构象分布。我们将使用定量偶极重偶联实验和半定量自旋扩散技术进一步确定药物和肽之间的分子间距离。我们的目标是获得具有主链和侧链约束的双层结合的 M2TMP 的高分辨率结构，并阐明由于药物结合 pH 值变化和突变而导致的结构差异。公共卫生相关性：脂质双层中甲型流感病毒 M2 蛋白的原子分辨率结构测定与治疗流感感染和预防未来美国和世界范围内的流感大流行直接相关。高分辨率结构信息对于设计针对甲型流感病毒中的耐药突变质子通道 S31N-M2 的新型抗病毒药物至关重要。