Genomics-Accelerated Discovery and Biosynthesis of Phosphonic Acid Natural Products

基因组学-膦酸天然产物的加速发现和生物合成

• 批准号: 10798945
• 负责人: Kou-San Ju
• 金额: $ 15.06万
• 依托单位: OHIO STATE UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-09-15 至 2025-07-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10798945
• 关键词: Acceleration; Actinobacteria class; Acute; Agriculture; Amination; Amino Acids; Anabolism; Antibiotics; Antimalarials; Antimicrobial Resistance; Arginine; Biochemical; Biochemistry; Biological; Biotechnology; Carbon; Chemicals; Classification; Classification Scheme; Communicable Diseases; DNA Sequence; Development; Dwarfism; Engineering; Enzymatic Biochemistry; Enzymes; Esters; Family; Future; Gene Cluster; Genetic; Genetic Variation; Genome; Genomics; Goals; Health; Heme; Human; Hydroxylation; Infection; Knowledge; Ligase; Ligation; Medicine; Metabolic; Mining; Modification; Molecular; Molecular Target; Natural Products; Nature; Outcome; Oxidoreductase; Pathway interactions; Peptides; Phosphonic Acids; Phosphorus; Property; Research; Route; Source; Stream; Substrate Specificity; System; Transfer RNA; Viral; antimicrobial; commercialization; drug development; effective therapy; genomic data; grasp; human mortality; improved; innovation; insight; interest; microbial; microbial genome; microbial genomics; mimicry; multi-drug resistant pathogen; novel; pharmacophore; phosphonate; public repository; response

PROJECT SUMMARY (UNCHANGED) Microbial phosphonic acids are a class of understudied natural products with significant utility in medicine. The antimicrobial, antiviral, and antimalarial activity of many useful phosphonic acids derives from potent and specific inhibition of metabolic enzymes through chemical mimicry of their natural substrates. These properties, along with the trove of novel biosynthetic gene clusters encoded within microbial genomic datasets, highlight their potential of phosphonic acid natural products new antimicrobials. In this project we focus our efforts on realizing their genomic potential of these compounds by establishing fundamental genetic and biochemical principles that define their biosynthetic and bioactivity landscape. Filling these gaps in knowledge will provide a systems-level understanding of natural product biosynthesis necessary to improve discovery and engineering of new phosphonic acids. Specifically, we investigate three recently discovered phosphonic acid peptides to uncover unusual hydroxylation, reduction, amination, and amino acid ligation enzymes, and the molecular basis of their antimicrobial activity. We expand and refine the framework for phosphonic acid natural product genomics through the isolation of new compounds from cryptic gene clusters, discovery of new pathways and enzymes for C-P bond formation, and the development of a classification scheme to improve prediction of phosphonic acid gene clusters and their chemical products.

项目摘要（不变） 微生物磷酸是一类研究的天然产物，具有明显的医学效用。这 许多有用的磷酸的抗菌，抗病毒和抗菌活性来自有效和 通过其天然底物的化学模拟代谢酶的特定抑制作用。这些属性， 以及在微生物基因组数据集中编码的新型生物合成基因簇的痕迹，突出显示 它们的磷酸天然产物的潜力新抗菌剂。在这个项目中，我们将精力集中在 通过建立基本遗传和生化，实现这些化合物的基因组潜力 定义其生物合成和生物活性景观的原则。在知识中填补这些空白将提供 系统级别对改善发现和工程的天然产品生物合成的理解 新的磷酸。具体而言，我们研究了三个最近发现的磷酸肽 发现异常的羟基化，还原，胺化和氨基酸连接酶，以及分子 其抗菌活性的基础。我们扩展并完善磷酸天然产物的框架 基因组学通过从神秘基因簇中隔离新化合物，发现新途径和 C-P键形成的酶，以及开发分类方案以改善预测 磷酸基因簇及其化学产物。

项目成果

The genome of Bacillus tequilensis EA-CB0015 sheds light into its epiphytic lifestyle and potential as a biocontrol agent.

• DOI: 10.3389/fmicb.2023.1135487
• 发表时间: 2023
• 期刊: Frontiers in microbiology
• 影响因子: 5.2

Valinophos Reveals a New Route in Microbial Phosphonate Biosynthesis That Is Broadly Conserved in Nature.

• DOI: 10.1021/jacs.2c02854
• 发表时间: 2022-06-08
• 期刊: JOURNAL OF THE AMERICAN CHEMICAL SOCIETY
• 影响因子: 15
• 作者: Zhang, Yeying;Chen, Li;Wilson, Jake A.;Cui, Jerry;Roodhouse, Hannah;Kayrouz, Chase;Pham, Tiffany M.;Ju, Kou-San
• 通讯作者: Ju, Kou-San