Molecular and Genomic Mechanisms in the Biology of Pregnancy and Parturition

妊娠和分娩生物学中的分子和基因组机制

• 批准号: 9208678
• 负责人: WILLIAM Lee KRAUS
• 金额: $ 134.3万
• 依托单位: UT SOUTHWESTERN MEDICAL CENTER
• 依托单位国家: 美国
• 财政年份: 2016
• 资助国家: 美国
• 起止时间: 2016-12-15 至 2021-11-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/9208678
• 关键词: Acetylation; Advisory Committees; Binding Sites; Biochemical; Biological; Biological Assay; Biology; Birth; Budgets; Cell Differentiation process; Cells; Cervical; Cervical Ripening; Cervix Uteri; ChIP-seq; Collaborations; Competence; Consent Forms; Data Analyses; Databases; Discipline of obstetrics; Enhancers; Epigenetic Process; Epithelial; Epithelial Cells; Epithelium; Equipment and Supplies; Estrogen Receptor alpha; Estrogen Receptors; Estrogens; Experimental Designs; Female; Gene Expression; Gene Expression Regulation; Gene Targeting; Genes; Genetic Transcription; Genome; Genomic Library; Genomic approach; Genomics; Goals; Grant; Gynecologic Surgical Procedures; HAS2 gene; Hormones; Hospitals; Human; Human Resources; Hyaluronan; IACUC; Immune; Impairment; Incidence; Infection; Inflammatory; Institutional Review Boards; Invaded; Laboratories; Length; Liquid substance; Maintenance; Manuscripts; Mediating; Molecular; Molecular Probes; Myometrial; Nuclear; Pathway interactions; Physiological; Pregnancy; Premature Birth; Premature Labor; Preparation; Procedures; Process; Progesterone; Progesterone Receptors; Program Research Project Grants; Protein Isoforms; Proteins; Receptor Activation; Records; Regulation; Reporting; Research; Research Infrastructure; Research Personnel; Research Project Grants; Role; Schedule; Services; Signal Pathway; Signal Transduction; Site; Stromal Cells; Techniques; Technology; Teleconferences; Term Birth; Testing; Time; Tissue Sample; Tissues; Training; Uterus; base; biological systems; chromatin modification; clinically relevant; computerized tools; cost; data archive; epigenetic regulation; epigenomics; global run on sequencing; human tissue; in vivo; inflammatory modulation; meeting abstracts; meetings; microorganism; myometrium; next generation sequencing; pregnant; premature; prevent; progesterone receptor A; progesterone receptor B; programs; receptor function; repository; reproductive; reproductive tract; tool; transcription factor; transcriptome sequencing

PROJECT SUMMARY/ABSTRACT In this new program project, we will utilize comprehensive global genomic approaches (RNA sequencing [RNA- seq], global run-on sequencing [GRO-seq], and chromatin immunoprecipitation sequencing [ChIP-seq]) to understand the biological mechanisms for term and preterm birth. This application is timely, because of the huge advances in genomic technologies combined with cutting-edge computational tools, which have dramati- cally advanced our understanding of signal-regulated gene transcription in a wide variety of biological systems. The global views generated by these assays provide a uniquely informative biological perspective that cannot be achieved by analyzing one or even a few genes at a time. We propose to utilize these state-of-the-art techniques to develop an in-depth understanding of the genomic and epigenomic mechanisms that underlie the regulation of myometrial quiescence-contractility, cervical competency-dilation, and that maintain barrier function of the cervix to protect the pregnancy against invading microorganisms and prevent prematurity. The P01 includes four interrelated projects: Project 1: Epigenetic Regulation of Myometrial Contractility in Pregnancy and Labor (Carole R. Mendelson); Project 2: Functional Roles of Estrogen Receptor a Acetylation in the Uterus (W. Lee Kraus); Project 3: Genomic Consequences of Estrogen Receptor Activation in the Cervix (R. Ann Word); Project 4: Mechanisms of Cervical Epithelial Barrier Protection Against Ascending Infection and Preterm Birth (Mala S. Mahendroo), supported by three cores: Administrative Core (Mendelson); Genomics and Computational Core (Kraus); Human Tissue and Biological Fluid Acquisition Laboratory Core (Word). The goals of these projects are: Project 1 - to define the genes and mechanisms that underlie the actions of progesterone (P4), via progesterone receptor isoforms, PR-A and PR-B, on inflammatory and `contractile' gene expression, and to characterize the chromatin modifications that mediate myometrial quiescence and accompany enhanced contractile gene expression leading to term and preterm labor; Project 2 - to achieve a better understanding of the biology of estrogen signaling through estrogen receptor a (ERa) in the female reproductive tract during pregnancy and parturition by elucidating the role of ERa acetylation in the function of the uterus and cervix of pregnant females and the molecular mechanisms by which ERa acetylation controls ERa-dependent gene regulation in these tissues; Project 3 - to understand the mechanisms by which PRs and ERs interact to alter gene expression, gestational length, and structural integrity of the cervix during pregnancy, cervical ripening and parturition, and; Project 4 – to utilize genomic, cell biological and biochemical approaches to advance our understanding of the mechanisms by which hyaluronan (HA) provides immune- protection and epithelial barrier function in the pregnant cervix, as well as the molecular mechanisms whereby HA synthase 2 is regulated. We propose that these interrelated projects, carried out by a highly interactive research team, will achieve our long-range goal of reducing the incidence of preterm birth.

项目摘要/摘要 在这个新的计划项目中，我们将利用全面的全球基因组方法（RNA测序[RNA-- SEQ]，全局跑步测序[GRO-SEQ]和染色质免疫沉淀测序[chip-Seq]） 了解术语和早产的生物学机制。此应用程序是及时的，因为 基因组技术的巨大进步以及具有戏剧性的尖端计算工具的结合 呼叫我们对各种生物系统中信号调节基因转录的理解。 这些分析产生的全球观点提供了一种独特的信息生物学观点 可以通过一次分析一个甚至几个基因来实现。我们建议利用这些最新的 对基因组和表观基因组机制的深入了解的技术 肌层静止合法性，宫颈胜任能力和维持障碍的调节 子宫颈保护怀孕免受侵入微生物并防止早产的功能。这 P01包括四个相互关联的项目：项目1：对肌层收缩性的表观遗传调节 怀孕和劳动（Carole R. Mendelson）；项目2：雌激素受体A乙酰化的功能作用 在子宫（W. Lee Kraus）中；项目3：子宫颈中雌激素受体激活的基因组后果 （R. Ann Word）;项目4：宫颈上皮屏障保护的机制，可抵抗上升感染和 早产（Mala S. Mahendroo），由三个核心支持：行政核心（Mendelson）；基因组学 和计算核心（KRAUS）；人体组织和生物流体采集实验室核心（Word）。这 这些项目的目标是：项目1-定义基因和机制的基础 孕酮（P4）通过孕激素受体同工型PR-A和PR-B，炎症和“收缩”基因 表达，并表征介导肌层静止和的染色质修饰和 伴随增强的收缩基因表达，导致术语和早产；项目2-实现 通过雌激素受体A（ERA）更好地理解雌激素信号的生物学 通过阐明ERA乙酰化在怀孕期间的生殖道和分娩的作用 怀孕雌性的子宫和子宫颈以及分子机制，ERA乙酰化控制 这些组织中的ERA依赖性基因调节；项目3-了解PRS和PRS的机制 ERS在改变子宫颈的基因表达，妊娠长度和结构完整性时相互作用 怀孕，宫颈成熟和分娩，以及；项目4 - 利用基因组，细胞生物学和生化 促进我们对透明质酸（HA）提供免疫机制的理解的方法 孕妇子宫颈的保护和上皮屏障功能以及分子机制 HA合酶2受调节。我们建议这些相互关联的项目是由高度互动的 研究团队将实现我们减少早产事件的远程目标。