VERMONT INBRE: BIOINFORMATICS CORE

佛蒙特州因布雷：生物信息学核心

• 批准号: 8360421
• 负责人: JUDITH L VAN HOUTEN
• 金额: $ 27.39万
• 依托单位: UNIVERSITY OF VERMONT & ST AGRIC COLLEGE
• 依托单位国家: 美国
• 财政年份: 2011
• 资助国家: 美国
• 起止时间: 2011-06-01 至 2012-05-31
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/8360421
• 关键词: Bioinformatics; Capital; Collaborations; Core Facility; Cyanobacterium; Databases; Development; Fiber; Funding; Future; Genetic; Genomics; Grant; Human Resources; Institution; Internet; Joints; Laboratories; Lead; Metagenomics; Modeling; National Center for Research Resources; Paper; Play; Principal Investigator; Research; Research Activity; Research Infrastructure; Research Personnel; Research Project Grants; Resources; Role; Science; Site; Skates; Skating; Source; Technical Expertise; Testing; United States National Institutes of Health; Universities; Vermont; Work; college; cost; data sharing; design; genome sequencing; infrastructure development; meetings; member; virtual; web site; Bioinformatics; Capital; Collaborations; Core Facility; Cyanobacterium; Databases; Development; Fiber; Funding; Future; Genetic; Genomics; Grant; Human Resources; Institution; Internet; Joints; Laboratories; Lead; Metagenomics; Modeling; National Center for Research Resources; Paper; Play; Principal Investigator; Research; Research Activity; Research Infrastructure; Research Personnel; Research Project Grants; Resources; Role; Science; Site; Skates; Skating; Source; Technical Expertise; Testing; United States National Institutes of Health; Universities; Vermont; Work; college; cost; data sharing; design; genome sequencing; infrastructure development; meetings; member; virtual; web site

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. Primary support for the subproject and the subproject's principal investigator may have been provided by other sources, including other NIH sources. The Total Cost listed for the subproject likely represents the estimated amount of Center infrastructure utilized by the subproject, not direct funding provided by the NCRR grant to the subproject or subproject staff. Bioinformatics Core Highlights The Vermont Genetics Network Bioinformatics Core provides support to researchers at the University of Vermont, VGN Baccalaureate Partner Institutions and regional collaborators. In the past year our focus has gradually shifted toward large research projects and regional collaborations. The major component of research work over the next year will be focused on completion of regional projects funded through our joint NSF grant (NECC) and the VGN supplement. These large scale projects were designed to develop technical expertise within the Bioinformatics Core, to implement a model for regional collaborations and to develop and implement the infrastructure to support such collaborations in the future. The VGN Bioinformatics Core plays a lead role in the regional projects. Bioinformatics Core Activities Research Activities (Excluding Microarray) Grants Submitted (PI or Key Personnel) 2 Large Research Projects 7 Small Research Projects 3 Presentations/Seminars Given 4 New Personnel Hired 2.5 Infrastructure and IT Colleges/Centers Provided IT Support 13 Core Facility Database Entries 237 Science Networks Created 1 Regional Collaborations 5 Microarray Facility - Bioinformatics Support Total Projects 45 Investigators 38 Off-Site Investigators 10 Papers / Presentations 1/1 Project Highlights -established a virtual organization of regional bioinformatics cores - North East Bioinformatics Collaborative -led development and implementation of a shared data center for NECC -tested model workflows with cloud computing to convert capital expenses to operational expenses for analysis needs -developing parallel (next gen.) sequencing support through implementation of a virtual genomics core facility -Lead Bioinformatics Core for regional cyanobacteria metagenomics study -Lead Bioinformatics Core for regional Little Skate genome sequence project Infrastructure Development -Member organizing committee for Little Skate Annotation Jamboree -Member technical committee for NECC regional fiber network project -developed and maintain the website for the National IDeA Funded Core Laboratories (NICL) -Member ABRF web committee -maintain a Regional Core Facilities database -Lead IT for NERLSCD regional core facilities meeting

该副本是利用资源的众多研究子项目之一 由NIH/NCRR资助的中心赠款提供。对该子弹的主要支持 而且，副投影的主要研究员可能是其他来源提供的 包括其他NIH来源。 列出的总费用可能 代表subproject使用的中心基础架构的估计量， NCRR赠款不直接向子弹或副本人员提供的直接资金。 生物信息学核心重点 佛蒙特州遗传学网络生物信息学核心为佛蒙特大学，VGN学士学位合作伙伴机构和区域合作者提供了支持。在过去的一年中，我们的重点逐渐转向大型研究项目和区域合作。 明年研究工作的主要组成部分将集中在完成通过我们的NSF赠款（NECC）和VGN补充剂资助的区域项目。这些大规模项目旨在在生物信息学核心内开发技术专长，以实施区域合作的模型，并开发和实施基础架构以支持将来的合作。 VGN生物信息学核心在区域项目中起着领先作用。 生物信息学核心活动 研究活动（不包括微阵列） 提交的赠款 （PI或关键人员）2 大型研究项目7 小型研究项目3 演讲/研讨会4 新人员雇用2.5 基础架构及其 提供支持的大学/中心13 核心设施数据库条目237 科学网络创建了1 区域合作5 微阵列设施 - 生物信息学支持 总项目45 调查人员38 现场调查人员10 论文 /演示文稿1/1 项目亮点 - 建立了区域生物信息学核心的虚拟组织 - 东北生物信息学协作 NECC共享数据中心的开发和实施 通过云计算测试的模型工作流程，将资本费用转换为分析需求的运营费用 - 通过实施虚拟基因组核心设施来开发平行（下一代）测序支持 - 区域蓝细菌宏基因组学研究的导致生物信息学核心 - 区域小滑板基因组序列项目的导致生物信息学核心项目 基础设施的发展 - 小滑板注释Jamboree的成员组织委员会 - NECC区域光纤网络项目的成员技术委员会 - 开发并维护由国家思想资助的核心实验室（NICL）的网站 - 成员ABRF网络委员会 - 维护区域核心设施数据库 - 在NERLSCD区域核心设施会议上登记它