HIGH PERFORMANCE COMPUTING INFRASTRUCTURE FOR THE VIRTUAL CELL

虚拟单元的高性能计算基础设施

• 批准号: 7722725
• 负责人: Ion I. Moraru
• 金额: $ 9.67万
• 依托单位: UNIVERSITY OF CONNECTICUT SCH OF MED/DNT
• 依托单位国家: 美国
• 财政年份: 2008
• 资助国家: 美国
• 起止时间: 2008-08-01 至 2009-04-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/7722725
• 关键词: Bioinformatics; Bite; Cells; Class; Client; Code; Computer Retrieval of Information on Scientific Projects Database; Data Storage and Retrieval; Databases; Documentation; Environment; Funding; Grant; Growth; High Performance Computing; Housing; Institution; Internet; Licensing; Numbers; Online Systems; Rapid Access to Intervention Development; Research; Research Infrastructure; Research Personnel; Resources; Side; Source; System; Training; United States National Institutes of Health; cluster computing; formycin triphosphate; repository; simulation; software development; supercomputer; virtual

This subproject is one of many research subprojects utilizing the resources provided by a Center grant funded by NIH/NCRR. The subproject and investigator (PI) may have received primary funding from another NIH source, and thus could be represented in other CRISP entries. The institution listed is for the Center, which is not necessarily the institution for the investigator. The infrastructure for VCell (which was deployed from the inception as a distributed, web-based client-server environment), as well as associated online documentation and training material have now been in place for over 9 years. Continuous additions of new features and capabilities to the Virtual Cell platform as well as the growth in the number of VCell users has required a constant increase in the computational resources of the VCell server side housed at the CCAM Computational Facility. Our Computational Facility is currently the largest resource for High Performance Computing at UCHC, and includes enterprise computing support for the software development team and collaborative projects. We host and manage several compute clusters totaling >300 CPUs, a 52-CPU bioinformatics cluster, 2 entry-level 64-bit supercomputers (a 16 CPU/96 GB RAM Itanium2 system an 8 CPU/64 GB RAM Xeon MP system), and an iSCSI SAN with 40+ TB of shared RAID storage capacity. The facilitie's enterprise systems, such as 2 AD domains, 3 class C subnets, 100+ workstations, and 30+ dedicated 32-bit and 64-bit Xeon and Opteron servers servers, provide for web hosting (5 domains, 2 wikis), database hosting and management (Oracle and MySQL), remote access (VPN, FTP, http dropbox), experimental and simulation data storage, code repositories (Envy, ClearCase, SVN), remote backup, shared access control, license management, and a grid computing infrastructure part of OpenScienceGrid.

该副本是利用众多研究子项目之一 由NIH/NCRR资助的中心赠款提供的资源。子弹和 调查员（PI）可能已经从其他NIH来源获得了主要资金， 因此，可以在其他清晰的条目中表示。列出的机构是 对于中心，这不一定是调查员的机构。 VCELL的基础架构（该基础架构是从成立开始作为分布式的，基于Web的客户服务器环境部署的），以及相关的在线文档和培训材料现已已有9年以上。 在虚拟单元平台上连续添加新功能以及VCELL用户数量的增长需要不断增加CCAM计算设施中VCELL服务器端的计算资源。 我们的计算设施目前是UCHC上高性能计算的最大资源，其中包括针对软件开发团队和协作项目的企业计算支持。 我们托管和管理多个计算集群> 300 cpus，一个52-CPU生物信息学集群，2个入门级64位超级计算机（16 CPU/16 CPU/96 GB RAM ITANIUM2系统A 8 CPU/64 GB RAM Xeon MP System）和ISCSI SAN具有40多个TB共享的RAID存储容量。 Facilitie的企业系统，例如2个AD域，3类C子网，100多个工作站以及30多个专用32位和64位Xeon和Opteron服务器服务器，提供网络托管（5个域，2个WIKIS），数据库，托管和管理（Oracle和MySQL），远程访问（VPN，FTP，HTTP Dropbox），实验和仿真数据存储，代码存储库（Engy，ClearCase，SVN），远程备份，共享访问控制，许可证管理，许可证管理和网格计算OpenScienceGrid的基础设施一部分。