The Effects of ERK2-Induced Phosphorylation of METTL3 on N6-methyladenosine (m6A) mRNA Methylation in Melanoma

ERK2 诱导的 METTL3 磷酸化对黑色素瘤中 N6-甲基腺苷 (m6A) mRNA 甲基化的影响

• 批准号: 10543536
• 负责人: Allen C Zhu
• 金额: $ 3.91万
• 依托单位: UNIVERSITY OF CHICAGO
• 依托单位国家: 美国
• 财政年份: 2020
• 资助国家: 美国
• 起止时间: 2020-01-01 至 2023-06-30
• 项目状态: 已结题
• 来源: https://reporter.nih.gov/project-details/10543536
• 关键词: Affect; Alanine; Apoptotic; BRAF gene; Binding; Biochemical; Biochemistry; Biological Assay; Biological Process; Catalytic Domain; Cell Proliferation; Cell physiology; Cellular biology; Co-Immunoprecipitations; Complex; DNA Damage; DNA Methylation; Data; Deposition; Development; Disease; Embryonic Development; Endometrial Carcinoma; Epigenetic Process; Fractionation; Future; Gene Expression; Gene Expression Regulation; Genes; Genomics; Goals; Growth; Half-Life; Homeostasis; Human; Immune response; Immunofluorescence Immunologic; MAPK1 gene; Malignant - descriptor; Malignant Neoplasms; Malignant neoplasm of lung; Mammals; Mass Spectrum Analysis; Mediating; Melanoma Cell; Memory; Messenger RNA; Methylation; Methyltransferase; Modeling; Modification; Molecular Biology; Monitor; Mus; Mutate; Mutation; Myeloid Leukemia; Nuclear; Nuclear Export; Pathway interactions; Patients; Pharmaceutical Preparations; Phosphorylation; Phosphorylation Site; Phosphotransferases; Play; Post-Transcriptional RNA Processing; Post-Transcriptional Regulation; Process; Protein Kinase; Proteins; Proto-Oncogene Proteins c-akt; RNA; RNA Decay; RNA Splicing; RNA Stability; RNA metabolism; RNA methylation; Reaction; Reader; Regulation; Renal Cell Carcinoma; Research; Role; Signal Induction; Signal Pathway; Signal Transduction; Site; Structure; Therapeutic; Transcript; Translations; Tumorigenicity; Untranslated RNA; Virus Diseases; Western Blotting; Work; cancer cell; cancer stem cell; cancer therapy; differential expression; embryonic stem cell; improved; in vitro Assay; insight; knock-down; leukemia; melanoma; mutant; novel; pluripotency; pluripotency factor; posttranscriptional; protein activation; response; stem cells; transcription factor; transcriptome; tumor growth

Project Summary The goal of this project is to determine how phosphorylation of METTL3 by ERK2 regulates N6- methyladenosine (m6A) methyltransferase activity to affect the tumorigenicity of melanoma cells. Post- transcriptional RNA modifications are a major component of regulating gene expression. N6-methyladenosine (m6A) is the most abundant internal mRNA and long non-coding RNA modification. Through its effects on RNA stability, structure, export, splicing, and translation, m6A influences many biological processes, including embryonic development, immune response, memory, viral infection, and cancer. m6A is selectively installed on certain mRNA transcripts by the methyltransferase-like 3 (METTL3), which acts as the catalytic subunit of the mammalian m6A methyltransferase “writer” complex, and must be precisely regulated for proper biological function. For example, endometrial cancer often contains reduced METTL3 expression, which leads to reduced m6A methylation. Reduced m6A methylation then affects mRNA metabolism of certain transcripts, which ultimately results in increased activation of the AKT pathway and tumorigenicity. Similar METTL3-dependent phenomena are also observed in leukemia, lung cancer, and embryonic stem cells. While METTL3 can regulate activation of signaling pathways, it is poorly understood how METTL3 is post-translationally regulated and how such regulation affects the methyltransferase activity of METTL3. Preliminary results indicate that activation of ERK2 phosphorylates METTL3, and that lack of METTL3 phosphorylation at these phospho-sites reduces m6A methylation. In murine embryonic stem cells, METTL3 phosphorylation appears to impact pluripotency factor expression. Because dysregulation of kinase signaling, including the ERK pathway, often leads to uncontrolled growth in cancer cells and plays a significant role in tumorigenicity, I aim to determine how ERK2 phosphorylation of METTL3 affects m6A methyltransferase function. I will use melanoma cells as a model because they frequently a contain BRAF V600E mutation that constitutively activates the ERK pathway. With a combination of molecular biology, biochemistry, and genomics, I will accomplish the following aims. (I) First, I will investigate the effects of METTL3 phosphorylation on the m6A methyltransferase complex activity. Specifically, I will study changes in enzymatic activity, m6A “writer” complex association, and subcellular localization. (II) Second, I will determine how METTL3 phosphorylation affects melanoma malignancy. Because m6A-seq data suggests the apoptotic signaling pathway is differentially methylated due to METTL3 phosphorylation, I will validate whether the apoptotic pathway is differentially active. Then I will determine which genes are differentially expressed, and which reader proteins effect those changes in expression. This work will elucidate a novel layer of post-transcriptional regulation in cancer. A better understanding of how RNA methylation is dysregulated by kinase signaling in cancers will be valuable for development of future cancer therapies.

项目成果

Global Detection of RNA Methylation by Click Degradation.

通过点击降解全面检测 RNA 甲基化。

• 发表时间: 2020-12-23
• 影响因子: 18.2
• 作者: Zhu, Allen C;He, Chuan
• 通讯作者: He, Chuan

REPIC: a database for exploring the N6-methyladenosine methylome.

REPIC：用于探索 N6-甲基腺苷甲基化组的数据库。

• 发表时间: 2020-04-28
• 影响因子: 12.3
• 作者: Liu, Shun;Zhu, Allen;He, Chuan;Chen, Mengjie
• 通讯作者: Chen, Mengjie

N6-Deoxyadenosine Methylation in Mammalian Mitochondrial DNA.

哺乳动物线粒体 DNA 中的 N6-脱氧腺苷甲基化。

• DOI: 10.1016/j.molcel.2020.02.018
• 发表时间: 2020-03-09
• 期刊: Molecular cell
• 影响因子: 16
• 作者: Ziyang Hao;Tong Wu;X. Cui;P. Zhu;Caiping Tan;Xiaoyang Dou;Kai;Yueh;Pei‐Hua Peng
• 通讯作者: Pei‐Hua Peng

The RNA-binding protein FMRP facilitates the nuclear export of N6-methyladenosine-containing mRNAs.

RNA 结合蛋白 FMRP 促进含有 N6-甲基腺苷的 mRNA 的核输出。

• 发表时间: 2019-12-27
• 作者: Hsu, Phillip J;Shi, Hailing;Zhu, Allen C;Lu, Zhike;Miller, Nimrod;Edens, Brittany M;Ma, Yongchao C;He, Chuan
• 通讯作者: He, Chuan

Stabilization of ERK-Phosphorylated METTL3 by USP5 Increases m6A Methylation.

USP5 对 ERK 磷酸化 METTL3 的稳定增加了 m6A 甲基化。

• DOI: 10.1016/j.molcel.2020.10.026
• 发表时间: 2020-11-19
• 期刊: Molecular cell
• 影响因子: 16
• 作者: Sun HL;Zhu AC;Gao Y;Terajima H;Fei Q;Liu S;Zhang L;Zhang Z;Harada BT;He YY;Bissonnette MB;Hung MC;He C
• 通讯作者: He C