Molecular phylogenetic and evolutional studies of mitochondrial genome in the order Galliformes

鸡形目线粒体基因组的分子系统发育和进化研究

• 批准号: 16580231
• 负责人: NISHIBORI Masahide
• 金额: $ 2.3万
• 依托单位: HIROSHIMA UNIVERSITY
• 依托单位国家: 日本
• 项目类别: Grant-in-Aid for Scientific Research (C)
• 财政年份: 2004
• 资助国家: 日本
• 起止时间: 2004 至 2005
• 项目状态: 已结题
• 来源: https://kaken.nii.ac.jp/en/grant/KAKENHI-PROJECT-16580231/
• 关键词: Galliformes; Molecular Phylogenetics; mitogenome; tribe; new world quail; ancestor of chicken; complete sequence of mitochondrial genome; morphological classification; ミトコンドリアDNA; 分子系統樹; 系統; ツカツクリ; ヤケイ; ウズラ

Domesticated fowls such as chicken, turkey, quail, and guineafowl are classically grouped in order Galliformes comprising 283 species. Galliformes consists of 5 families. The 283 species are grouped into 75 genera constituting 5 families. The current grouping has been performed on the basis of morphological features and genomic DNA-DNA hybridization. In the present study, in order to obtain a phylogenetic relationship of avian species grouped in Galliformes based on genome sequence, we have collected blood samples from 29 individuals belonging to 23 species (14 genera in 5 families in Galliformes), and determined the nucleotide sequence of their entire mitochondrial DNAs. Then, using the concatenated amino acid sequence deduced from 12 mitochondrial genes (excluding ND6 gene), phylogenetic analyses were performed by maximum parsimony, and Bayesian analysis methods. The analyses with the two different methods gave one and the same phylogenetic tree for the 23 species. The outline of the tree is as follows : (((((Phasianidae, Odontophoridae), Numididae), Cracidae), Megapodidae), Anseriformes). In the present study, two crucial findings for species classification have been revealed : one is that the species classically grouped in the tribes Phasianini (pheasant) and Perdicinin (partridge) were not grouped in corresponding monophyletic clusters. More precisely, species in Phasianini and species in Perdicinin formed monophyletic clusters. The other one is that Lagopus mutus and Melgaris Gallopavo are evolutionally much closer to genera Lophura than ever reported. These findings would contribute to species conservation and breeding of domesticated fowls.

鸡肉，土耳其，鹌鹑和豚鼠等驯化的禽类经典地分组为galliformes，其中包括283种。 Galliformes由5个家庭组成。 283种分为75属，构成5个家庭。当前的分组是根据形态特征和基因组DNA-DNA杂交进行的。在本研究中，为了获得基于基因组序列中胆汁虫分类的鸟类的系统发育关系，我们收集了来自属于23种的29个个体的血液样本（甲galliformes的5个家族中的14个属），并确定了整个线粒体DNA的核苷酸序列。然后，使用从12个线粒体基因（不包括ND6基因）推导的联合氨基酸序列，通过最大parsimony和贝叶斯分析方法进行系统发育分析。用两种不同方法的分析给出了23种的一棵和相同的系统发育树。树的轮廓如下：（（（（（（（（（（phasianidae，odontophoridae）在本研究中，已经揭示了物种分类的两个关键发现：一个是，一个经典的物种Phasianini（Pheasant）（Pheasant）和perdicinin（Partridge）（Partridge）并未在相应的单属群集中分组。更确切地说，phasianini和perdicinin中的物种形成单系簇。另一个是Lagopus Mutus和Melgaris gallopavo在进化上比洛夫拉属更近。这些发现将有助于物种保护和驯化的禽类的繁殖。

项目成果

Genetic variability and relationships of native Japanese chickens based on microsatellite DNA polymorphisms - Focusing on the natural monuments of Japan -.

基于微卫星 DNA 多态性的日本本土鸡的遗传变异和关系 - 关注日本的自然遗迹 -。

• 发表时间: 2006
• 期刊: Journal of Poultry Science 43
• 作者: Tahir;M.;Saleh;F.;Ohtsuka;A.;Hayashi;K.;Fumihiko Okumura;Masahide Nishibori;Masahide Nishibori;Bayed Abdel-Maksoud Osman
• 通讯作者: Bayed Abdel-Maksoud Osman

Plumage color and other morphologic characteristic variation of the native chicken in Cambodia

柬埔寨土鸡的羽毛颜色和其他形态特征变异

• 发表时间: 2006
• 期刊: Rep. Soc, Res. Native Livestock 23
• 作者: Tahir;M.;Saleh;F.;Ohtsuka;A.;Hayashi;K.;Fumihiko Okumura;Masahide Nishibori
• 通讯作者: Masahide Nishibori

Genetic variability and relationships of Japanese native chickens assessed by microsatellite DNA profiling - Focusing on the breeds established in Kochi Prefecture, Japan -

通过微卫星 DNA 分析评估日本本土鸡的遗传变异和关系 - 重点关注日本高知县建立的品种 -

• 发表时间: 2005
• 期刊: Asian Australia Journal of Animal Science 18
• 作者: Tahir;M.;Saleh;F.;Ohtsuka;A.;Hayashi;K.;Fumihiko Okumura;Masahide Nishibori;Masahide Nishibori;Bayed Abdel-Maksoud Osman;Masahide Nishibori;西堀正英;Masahide Nishibori;Yoshio Yamamoto;Sayed Abdel-Maksoud Osman
• 通讯作者: Sayed Abdel-Maksoud Osman

Complete sequence of mitochondrial D-loop region of red junglefowls (Gallus gallus) and their genetic diversity in Myanmar and its neighbor countries.

缅甸及其邻国红原鸡线粒体 D 环区域的完整序列及其遗传多样性。

• 发表时间: 2004
• 期刊: Rep.Soc.Res.Native Livestock 21
• 作者: Tahir;M.;Saleh;F.;Ohtsuka;A.;Hayashi;K.;Fumihiko Okumura;Masahide Nishibori;Masahide Nishibori;Bayed Abdel-Maksoud Osman;Masahide Nishibori;西堀正英;Masahide Nishibori;Yoshio Yamamoto;Sayed Abdel-Maksoud Osman;Masahide Nishibori;Mami Shibusawa;Yasuyuki Wada;Masahide Nishibori;Yoshiyuki Wada;Masahide Nishibori
• 通讯作者: Masahide Nishibori

Complete nucleotide sequence of mitochondrial genome in Silkie fowl (Gallus gallus var domestics)

乌骨鸡（Gallus gallus var Domestics）线粒体基因组的完整核苷酸序列

• 发表时间: 2004
• 期刊: Journal of Poultry Science 41
• 作者: Tahir;M.;Saleh;F.;Ohtsuka;A.;Hayashi;K.;Fumihiko Okumura;Masahide Nishibori;Masahide Nishibori;Bayed Abdel-Maksoud Osman;Masahide Nishibori;西堀正英;Masahide Nishibori;Yoshio Yamamoto;Sayed Abdel-Maksoud Osman;Masahide Nishibori;Mami Shibusawa;Yasuyuki Wada
• 通讯作者: Yasuyuki Wada