EF: Collaborative Research: MTM 2: Marine Invertebrate Microbiome Assembly, Diversification, and Coevolution

EF：合作研究：MTM 2：海洋无脊椎动物微生物组组装、多样化和共同进化

• 批准号: 2150107
• 负责人: Purushotham Bangalore
• 金额: $ 53.69万
• 依托单位: University of Alabama Tuscaloosa
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2021
• 资助国家: 美国
• 起止时间: 2021-08-15 至 2025-12-31
• 项目状态: 未结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=2150107&HistoricalAwards=false
• 关键词: EF; Collaborative; Research; MTM; Marine

Microbes associated with marine invertebrates are of broad interest for establishing the rules of life for host-microbe associations. Although some marine invertebrates host only one or two types of microbes, others host thousands of different kinds of microbes. The project goal is to understand how and why particular microbes are hosted by invertebrates; whether the diversity of these microorganisms is related to the diversity of their hosts; and how these associations change over evolutionary time. The investigators are training graduate, undergraduate, and high school students how to assess microbiome diversity; how to use novel software to search, categorize, and compile data from DNA sequence archives; and how to identify and classify marine invertebrates. They are integrating graduate students and undergraduate students in the development of a high-school-based program to mentor students in the assessment of marine invertebrate biodiversity, training the next generation of scientists in invertebrate biology, host-microbe ecology, and evolutionary data analyses. In addition, research scientists are being trained to use novel data mining and compilation software to address unexplored questions in host-microbe evolution.This project is investigating three ecological and evolutionary processes that structure the biodiversity of microbiomes: assembly, diversification, and coevolution. While previous studies have focused on the host-specificity of microbiomes, the project shifts the perspective from host evolution to microbial evolution. The project is developing models of host-symbiont interactions that function across multiple spatial, temporal, and taxonomic scales. By incorporating theories from evolutionary ecology and metacommunity ecology, the investigators are assessing the relative importance of environmental filtering, host-associated selection pressures, spatial connectivity, microbial competition, cospeciation, and host switching on the assembly of microbiomes. Through the use of phylogenetic comparative methods, the project is testing whether different clades of symbionts and clades of hosts respond to these forces differently. The investigators are examining how microbiomes both impact and respond to the process of host speciation in sympatry and allopatry. To accomplish these goals, novel software and evolutionary models are being developed to support large-scale analyses of microbial diversification and colonization of eukaryotic hosts. These models are being experimentally tested by using a replicated series of settlement structures to examine the assembly of sessile marine invertebrate communities and the assembly of their associated microbiomes. In addition, marine sponges are being used as model organisms to contrast allopatric and sympatric microbiome divergence over evolutionary time. These investigations are enhancing our broader understanding of the roles of microbiomes in sustaining biodiversity.This project is funded by the Understanding the Rules of Life: Microbiome Theory and Mechanisms Program, administered as part of NSF's Ten Big Ideas through the Division of Emerging Frontiers in the Directorate for Biological Sciences.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

与海洋无脊椎动物相关的微生物对于建立宿主-微生物关联的生命规则具有广泛的兴趣。虽然一些海洋无脊椎动物只含有一种或两种微生物，但其他海洋无脊椎动物则含有数千种不同的微生物。该项目的目标是了解无脊椎动物如何以及为何存在特定微生物；这些微生物的多样性是否与其宿主的多样性有关；以及这些关联如何随着进化时间而变化。研究人员正在培训研究生、本科生和高中生如何评估微生物组多样性；如何使用新颖的软件来搜索、分类和编译 DNA 序列档案中的数据；以及如何识别和分类海洋无脊椎动物。他们正在将研究生和本科生整合到一个高中项目的开发中，指导学生评估海洋无脊椎动物的生物多样性，培训下一代无脊椎动物生物学、宿主微生物生态学和进化数据分析方面的科学家。此外，研究科学家正在接受培训，使用新颖的数据挖掘和编译软件来解决宿主微生物进化中未探索的问题。该项目正在研究构建微生物组生物多样性的三个生态和进化过程：组装、多样化和共同进化。虽然之前的研究主要集中在微生物组的宿主特异性上，但该项目将视角从宿主进化转向了微生物进化。该项目正在开发在多个空间、时间和分类尺度上发挥作用的宿主-共生体相互作用模型。通过结合进化生态学和元群落生态学的理论，研究人员正在评估环境过滤、宿主相关的选择压力、空间连通性、微生物竞争、共种和宿主切换对微生物组组装的相对重要性。通过使用系统发育比较方法，该项目正在测试不同的共生体分支和宿主分支是否对这些力量有不同的反应。研究人员正在研究微生物组如何影响和响应同源和异域宿主物种形成过程。为了实现这些目标，正在开发新的软件和进化模型来支持微生物多样性和真核宿主定殖的大规模分析。 这些模型正在通过使用一系列复制的定居结构进行实验测试，以检查固着海洋无脊椎动物群落的组装及其相关微生物组的组装。此外，海洋海绵被用作模型生物，以对比进化过程中异域和同域微生物组的差异。这些调查增强了我们对微生物组在维持生物多样性方面的作用的更广泛的理解。该项目由理解生命规则：微生物组理论和机制计划资助，该计划作为 NSF 十大理念的一部分，通过新兴前沿部门进行管理。生物科学理事会。该奖项反映了 NSF 的法定使命，并通过使用基金会的智力价值和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Efficient Asynchronous I/O with Request Merging

具有请求合并功能的高效异步 I/O

• DOI: 10.1109/ipdpsw59300.2023.00107
• 发表时间: 2023-05-01
• 期刊: 2023 IEEE International Parallel and Distributed Processing Symposium Workshops (IPDPSW)
• 作者: Md. Kamal Hossain Chowdhury;Houjun Tang;J. L. Bez;P. Bangalore;S. Byna
• 通讯作者: S. Byna