Functional and Population Genomics of Ecologically Critical Eukaryotic Microbes

生态关键真核微生物的功能和群体基因组学

• 批准号: RGPIN-2015-05937
• 负责人: Corradi, Nicolas
• 金额: $ 2.77万
• 依托单位: University of Ottawa
• 依托单位国家: 加拿大
• 项目类别: Discovery Grants Program - Individual
• 财政年份: 2016
• 资助国家: 加拿大
• 起止时间: 2016-01-01 至 2017-12-31
• 项目状态: 已结题
• 来源: https://www.nserc-crsng.gc.ca/ase-oro/Details-Detailles_eng.asp?id=613836
• 关键词: Functional; Population; Genomics; Ecologically; Critical

Functional and Population Genomics of Ecologically Critical Eukaryotic Microbes The Arbuscular Mycorrhizal Fungi (AMF) and Microsporidians are ubiquitous unicellular organisms that impact the function of global ecosystems. AMF are root symbionts of many plants, and their presence in the soils is typically linked with an increase in plant fitness and ecosystem biodiversity. Recent reports have suggested that not all AMF individuals (i.e. single spores) affect the fitness of plants in the same way: some make one plant grow better than others. Although the reasons for this variability in plant growth are presently unknown, there are many reasons to believe that they could have a genetic origin. The first objective of my proposed research will to tackle this unknown aspect of AMF biology by investigating the extent and nature of polymorphism that exists within and among individual spores of a model AMF; Rhizophagus irregularis. This will be done by combining cutting-edge DNA sequencing and bioinformatics techniques with innovative experimental designs targeted at AMF isolates that we currently grow in the lab. The Microsporidia is a phylum composed of intracellular parasites that are closely related to fungal lineages. These organisms can infect a wide range of animals, including humans, and many of their genomes have been sequenced in recent years. To date, this genome data has resulted in the discovery of genes potentially used by microsporidians to infect and abuse their hosts, but many of these results have never been experimentally validated. The second objective of my proposal will aim to reveal which microsporidian genes are specifically expressed following infection of the host cells. This will expose the proteins that are used by microsporidian parasites to exploit their hosts. We will also investigate the mechanisms involved in the creation of genomic diversity in microsporidia by exploring genome variation among members of the same species, and by studying the genome diversity of these parasites in their natural ecosystems. This is essential for understanding how pathogens create new genetic variation that could be used to invade new hosts or expand to different geographic areas.

生态关键真核微生物的功能和群体基因组学 丛枝菌根真菌 (AMF) 和小孢子虫是普遍存在的单细胞生物，影响全球生态系统的功能。 AMF 是许多植物的根部共生体，它们在土壤中的存在通常与植物适应性和生态系统生物多样性的增加有关，最近的报告表明，并非所有 AMF 个体（即单孢子）都以相同的方式影响植物的适应性。 ：有些使一种植物比其他植物生长得更好，尽管目前尚不清楚植物生长差异的原因，但有很多理由相信它们可能具有遗传起源。我提出的研究的第一个目标是解决这个未知的方面。 AMF生物学通过研究 AMF 模型单个孢子内部和之间存在的多态性的程度和性质，这将通过将尖端 DNA 测序和生物信息学技术与我们目前生长的 AMF 分离株的创新实验目标设计相结合来完成。实验室。 微孢子虫是由与真菌谱系密切相关的细胞内寄生虫组成的门，这些生物体可以感染包括人类在内的多种动物，并且近年来它们的许多基因组已被测序。我的建议的第二个目标是揭示哪些微孢子虫基因被特异性表达。感染宿主细胞后，这将暴露微孢子虫寄生虫用来利用其宿主的蛋白质，我们还将通过探索同一物种成员之间的基因组变异来研究微孢子虫基因组多样性的产生机制。通过研究这些寄生虫在自然生态系统中的基因组多样性。 这对于了解病原体如何产生新的遗传变异至关重要，这些变异可用于入侵新宿主或扩展到不同的地理区域。