Erythrocyte maturation through global remodeling of the proteome
通过蛋白质组的整体重塑实现红细胞成熟
基本信息
- 批准号:10598561
- 负责人:
- 金额:$ 55.7万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2021
- 资助国家:美国
- 起止时间:2021-04-01 至 2025-03-31
- 项目状态:未结题
- 来源:
- 关键词:ActininActinsAddressAnabolismAutomobile DrivingBindingBiochemicalBiochemistryBiological ProcessBiologyBypassCell Differentiation processCellsCellular biologyCentrosomeComplexCrystallinsCrystallographyCytoskeletal ModelingCytoskeletal ProteinsCytoskeletonDataDevelopmentDynein ATPaseEnzymesErythroblastsErythrocytesErythroidErythroid CellsEukaryotic CellGenerationsGenesGeneticGlobinGoalsHemoglobinHydrogenIn VitroInformaticsLens FiberLeucine-Rich RepeatMapsMass Spectrum AnalysisMediatingMessenger RNAMicroscopyMicrotubulesMitochondrial ProteinsMotor ActivityMusMutateMyosin ATPasePhasePhysiologicalPlayProcessProteasome BindingProteinsProteomeProteomicsRadialRegulatory PathwayReticulocytesRibosomesRoleSignal TransductionSpecificitySpectrinSystemTestingTimeTranslational RegulationTranslationsTubulinUbiquitinUbiquitin Like ProteinsUbiquitin-Conjugating EnzymesUbiquitinationVariantVesicleWorkcell typecrosslinkdynactinerythroid differentiationfiber cellgenetic regulatory proteininterestmRNA Translationmilligrammulticatalytic endopeptidase complexmutantnovelpreservationprogramsprotein crosslinkprotein degradationreconstitutionribosome profilingstructural biologytranscriptome sequencingtranscriptomicsubiquitin ligase
项目摘要
PROJECT SUMMARY / ABSTRACT
As cells undergo extreme forms of terminal differentiation, they are able to accumulate specific proteins
to exceptionally high levels–hundreds of milligrams per ml in the case of globins and crystallins. At the same
time, almost all other cellular components are eliminated. How cells can carry out such vast programs of
biosynthesis and degradation simultaneously has been almost a complete mystery. We proposed in 1995 that
the ubiquitin-proteasome system (UPS) may play a central role in global proteome remodeling. Using murine
reticulocytes, a uniquely powerful system to study global proteome remodeling, we found that indeed UBE2O, a
ubiquitin-conjugating enzyme that is strongly induced in late erythroid differentiation, mediates the elimination of
ribosomes and myriad other proteins via the proteasome. We proceeded to examine other UPS components
that are strongly induced in erythroid cells, and found that TRIM10 eliminates dynactin, many myosins, actin
crosslinking proteins, the erythroid regulator TMCC2, and COP1 vesicles; TRIM58 eliminates dynein and
centrosomal proteins; the unique ubiquitin-like protein TBCEL specifically dismantles the tubulin cytoskeleton;
and UBE2H, together with the GID complex, eliminates a broad set of mRNA-binding translational regulatory
proteins while also promoting the elimination of many mitochondrial proteins. Thus, these UPS components have
highly distinct specificities, each driving the elimination of different parts of the cell or proteome. This work
uncovers a vast new regulatory pathway that appears to be central to the maturation of the erythrocyte. It also
indicates a remarkable new capacity of the UPS: to effect global and developmentally controlled proteomic
remodeling. In contrast to the above-described proteins, most UPS components disappear during erythroid
maturation; thus, a highly specialized variant of the UPS mediates remodeling. Focusing on TBCEL, TRIM10,
and TRIM58, we will use biochemical reconstitution, crystallography, and hydrogen exchange mass
spectrometry to resolve specific mechanisms of degradation and degradation signals in target proteins. Cellular
studies will focus on the cytoskeleton and on translational control as highlighted by our proteomic data. As the
erythroblast matures into the red blood cell, its radial, microtubule-based cytoskeleton is replaced by an acentric
actin-based network. We will characterize how the cytoskeleton functions during the unusual and to date
uncharacterized transition period that takes place in the reticulocyte. We will then assess the impact of
programmed elimination of tubulin and other cytoskeletal proteins on this cytoskeletal transformation. Although
late erythroid cells are known to be characterized by extensive translational regulation, our findings indicate a
new mechanism by which diverse translational regulators are themselves controlled. We will use our mutants to
determine the impact of UBE2H-dependent ubiquitination on mRNA translation in reticulocytes, using RNA-Seq
and Ribo-Seq in parallel. In summary, we propose that ubiquitin-dependent proteome remodeling is an important
new aspect of the biology of eukaryotic cells, critical for the generation of highly differentiated cell types.
项目摘要 /摘要
随着细胞经历极端形式的末端分化,它们能够积累特定的蛋白质
对于球蛋白和结晶蛋白而言,每毫升的数百毫克含量很高。同样
时间,消除了几乎所有其他细胞成分。细胞如何执行如此庞大的程序
生物合成和退化几乎是一个完全的谜。我们在1995年提议
泛素 - 蛋白酶体系统(UPS)可能在全球蛋白质组重塑中起核心作用。使用鼠
网状细胞是一种研究全球蛋白质组重塑的独特功能的系统,我们发现确实是ube2o,一个
泛素结合酶在红细胞病晚期分化中强烈诱导,介导消除
核糖体和其他蛋白质通过蛋白酶体。我们开始检查其他UPS组件
在红细胞细胞中强烈诱导的,发现TRIM10消除了dynactin,许多肌动蛋白,肌动蛋白
交联蛋白,红细胞调节剂TMCC2和COP1蔬菜; TRIM58消除了动力蛋白和
中心蛋白;独特的泛素样蛋白TBCEL专门拆除了微管蛋白的细胞骨架。
和UBE2H,与GID复合物一起消除了一组广泛的mRNA结合翻译调节
蛋白质同时还促进了消除许多线粒体蛋白。那就是这些UPS组件
高度不同的规格,每个规格都可以消除细胞或蛋白质组的不同部位。这项工作
揭示了一条巨大的新调节途径,这似乎是红细胞成熟的核心。也是如此
表示UPS的非凡新能力:实现全球和开发的蛋白质组学
重塑。与上述蛋白质相反,大多数UPS组件在红斑期间消失
成熟;因此,UPS的高度专业化变体介导了重塑。专注于tbcel,trim10,
和TRIM58,我们将使用生化重构,晶体学和氢交换质量
靶蛋白中降解和降解信号的特定机制的光谱法。细胞
研究将重点放在细胞骨架和转化控制上,如我们的蛋白质组学数据所强调。作为
红细胞成熟到红细胞中,其径向,基于微管的细胞骨架被分散替代
基于肌动蛋白的网络。我们将表征细胞骨架在异常和迄今为止的功能
在网状细胞中发生的未表征过渡期。然后,我们将评估
在这种细胞骨架转化上,编程消除微管蛋白和其他细胞骨架蛋白。虽然
已知晚期红细胞细胞的特征是广泛的翻译调节,我们的发现表明
潜水员翻译调节器本身可以控制的新机制。我们将使用我们的突变体
使用RNA-Seq确定Ube2H依赖性泛素化对网状细胞中mRNA翻译的影响
和Ribo-Seq并行。总而言之,我们建议泛素依赖性蛋白质组重塑是重要的
真核细胞生物学的新方面,对于高度分化的细胞类型的产生至关重要。
项目成果
期刊论文数量(0)
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MARK D FLEMING的其他文献
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{{ truncateString('MARK D FLEMING', 18)}}的其他基金
Erythrocyte maturation through global remodeling of the proteome
通过蛋白质组的整体重塑实现红细胞成熟
- 批准号:
10211683 - 财政年份:2021
- 资助金额:
$ 55.7万 - 项目类别:
Erythrocyte maturation through global remodeling of the proteome
通过蛋白质组的整体重塑实现红细胞成熟
- 批准号:
10378459 - 财政年份:2021
- 资助金额:
$ 55.7万 - 项目类别:
Systems Biology of Bone Marrow Failure and MDS for Precision Medicine
骨髓衰竭和 MDS 的系统生物学用于精准医学
- 批准号:
10018490 - 财政年份:2019
- 资助金额:
$ 55.7万 - 项目类别:
Systems Biology of Bone Marrow Failure and MDS for Precision Medicine
骨髓衰竭和 MDS 的系统生物学用于精准医学
- 批准号:
10228701 - 财政年份:2019
- 资助金额:
$ 55.7万 - 项目类别:
Systems Biology of Bone Marrow Failure and MDS for Precision Medicine
骨髓衰竭和 MDS 的系统生物学用于精准医学
- 批准号:
10454344 - 财政年份:2019
- 资助金额:
$ 55.7万 - 项目类别:
Systems Biology of Bone Marrow Failure and MDS for Precision Medicine
骨髓衰竭和 MDS 的系统生物学用于精准医学
- 批准号:
10669683 - 财政年份:2019
- 资助金额:
$ 55.7万 - 项目类别:
A novel program of ubiquitination in global remodeling of the erythroid proteome
红系蛋白质组全局重塑中的泛素化新程序
- 批准号:
8886115 - 财政年份:2015
- 资助金额:
$ 55.7万 - 项目类别:
Murine Models of Heme Metabolism and Iron Recycling
血红素代谢和铁回收的小鼠模型
- 批准号:
8737253 - 财政年份:2013
- 资助金额:
$ 55.7万 - 项目类别:
Murine Models of Heme Metabolism and Iron Recycling
血红素代谢和铁回收的小鼠模型
- 批准号:
8615014 - 财政年份:2013
- 资助金额:
$ 55.7万 - 项目类别:
Ubiquitination in erythropoiesis and the pathophysiology of anemia
红细胞生成中的泛素化和贫血的病理生理学
- 批准号:
8301161 - 财政年份:2012
- 资助金额:
$ 55.7万 - 项目类别:
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