Mechanism of Epigenetic Inheritance

表观遗传机制

• 批准号: 10796601
• 负责人: Zhiguo Zhang
• 金额: $ 5.02万
• 依托单位: COLUMBIA UNIVERSITY HEALTH SCIENCES
• 依托单位国家: 美国
• 财政年份: 2016
• 资助国家: 美国
• 起止时间: 2016-09-01 至 2026-07-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10796601
• 关键词: Binding Proteins; Bioinformatics; Cell Cycle; Cells; Chromatin; Complex; Coupled; Cryoelectron Microscopy; DNA; DNA biosynthesis; DNA replication fork; Elements; Endogenous Retroviruses; Epigenetic Process; Euchromatin; Eukaryotic Cell; Genomic DNA; Heterochromatin; Histones; Human Resources; Immunotherapy; Inherited; Laboratories; Methods; Modification; Molecular; Mus; Nucleosomes; Peptide Sequence Determination; Process; Proteins; Repression; S phase; Yeasts; cancer cell; cost; daughter cell; embryonic stem cell; genome integrity; histone modification; insight; novel; response; transmission process

Abstract In eukaryotic cells, genomic DNA is packaged into chromatin that encodes epigenetic information and maintain genome integrity. Chromatin is further organized into distinct functional domains, such as heterochromatin and euchromatin, that contain different post-translational histone modifications (PTM). How different chromatin states are inherited during S phase of the cell cycle is one of the most challenging questions in the chromatin and epigenetic fields. The “first” step in this complex process is the assembly of replicated DNA into nucleosomes using both parental and newly-synthesized histones in a process that is tightly coupled to ongoing DNA synthesis. We have been studying how nucleosomes are formed following DNA replication and have made multiple major contributions to this process. However, how parental histone (H3-H4)2 tetramers, the primary carrier of epigenetic modifications, are transferred to replicating DNA is still poorly understood, which hinders our understanding of the transmission of epigenetic information into daughter cells. The major challenge to understanding parental histone (H3-H4)2 assembly is a lack of methods to track this process. We have developed the eSPAN (enrichment and Sequencing Protein- Associated Nascent DNA) method that can discern whether a protein binds to leading or lagging strands of DNA replication forks in both yeast and mouse embryonic stem (ES) cells. This method makes it possible to identify factors that function in nucleosome assembly of parental histone (H3-H4)2. Moreover, we discovered that cells defective in parental histone transfer compromise the repression of endogenous retrovirus (ERVs), repetitive DNA elements that are normally silenced via a heterochromatin-based mechanism. Others show that ERV reactivation in cancer cells leads to increased response to immunotherapy. In this proposal, we will elucidate the molecular mechanisms whereby parental (H3-H4)2 are reassembled into nucleosomes following DNA replication in yeast and mouse ES cells and determine how deficiencies in this process impact ERV silencing. Together, these studies will address fundamental questions regarding chromatin replication and epigenetic inheritance, while also providing novel insights into a major epigenetic mechanism that boosts the response of cancer cells to immunotherapy.

抽象的 在真核细胞中，将基因组DNA包装到染色质中，该染色质编码表观遗传信息并维持 基因组完整性。染色质进一步组织为不同的功能域，例如异染色质和 全染色质，其中包含不同的翻译后Hisstone修饰（PTM）。染色质如何不同 在细胞周期的S阶段继承状态是挑战性问题之一 染色质和表观遗传场。这个复杂过程中的“第一”步骤是将复制的DNA组装到 在紧密耦合的过程中，使用亲本和新同一组蛋白的核小体使用核小体 DNA合成。我们一直在研究DNA复制后如何形成核小体，并且 为此过程做出了多个重大贡献。但是，父母组蛋白如何（H3-H4）2四聚体， 表观遗传修饰的主要载体被转移到复制DNA仍然很少了解，这 阻碍了我们对表观遗传信息传播到子细胞的理解。专业 了解父母组蛋白（H3-H4）2组装的挑战是缺乏跟踪此过程的方法 过程。我们已经开发了ESPAN（富集和测序蛋白相关的新生DNA） 可以识别蛋白质是否与两者中的DNA复制叉的链条或滞后链结合的方法 酵母和小鼠胚胎（ES）细胞。这种方法使确定在 父母Hisstone的核小体组装（H3-H4）2。此外，我们发现亲本中的细胞有缺陷 Hisstone转移妥协了内源性逆转录病毒（ERV）的反射，重复的DNA元素 通常通过基于异染色质的机制沉默。其他人则表明癌症中的ERV重新激活 细胞导致对免疫疗法的反应增加。在此提案中，我们将阐明分子 在酵母中DNA复制后，将父母（H3-H4）2重新组装成核小体的机制（H3-H4）2 和小鼠ES细胞，并确定此过程中的缺陷如何影响ERV沉默。在一起，这些 研究将解决有关染色质复制和表观遗传遗传的基本问题，而 还为主要的表观遗传机制提供新的见解，该机制可以提高癌细胞对 免疫疗法。

项目成果

A mechanism for preventing asymmetric histone segregation onto replicating DNA strands.

• DOI: 10.1126/science.aat8849
• 发表时间: 2018-09-28
• 期刊: Science (New York, N.Y.)
• 作者: Yu C;Gan H;Serra-Cardona A;Zhang L;Gan S;Sharma S;Johansson E;Chabes A;Xu RM;Zhang Z
• 通讯作者: Zhang Z

RPA Interacts with HIRA and Regulates H3.3 Deposition at Gene Regulatory Elements in Mammalian Cells.

• DOI: 10.1016/j.molcel.2016.11.030
• 发表时间: 2017-01-19
• 期刊: Molecular cell
• 影响因子: 16
• 作者: Zhang H;Gan H;Wang Z;Lee JH;Zhou H;Ordog T;Wold MS;Ljungman M;Zhang Z
• 通讯作者: Zhang Z

CHAF1B Overexpression: A Brake for the Differentiation of Leukemia Cells.

• DOI: 10.1016/j.ccell.2018.10.011
• 发表时间: 2018-11-12
• 期刊: Cancer cell
• 影响因子: 50.3
• 作者: Li Q;Zhang X;Zhang Z
• 通讯作者: Zhang Z

Coordination of histone chaperones for parental histone segregation and epigenetic inheritance.

亲代组蛋白分离和表观遗传的组蛋白伴侣的协调。

• DOI: 10.1101/gad.351278.123
• 发表时间: 2024
• 期刊: Genes & development
• 影响因子: 10.5
• 作者: Fang,Yimeng;Hua,Xu;Shan,Chun-Min;Toda,Takenori;Qiao,Feng;Zhang,Zhiguo;Jia,Songtao
• 通讯作者: Jia,Songtao

Multisite Substrate Recognition in Asf1-Dependent Acetylation of Histone H3 K56 by Rtt109.

Rtt109 对 Asf1 依赖性组蛋白 H3 K56 乙酰化的多位点底物识别

• DOI: 10.1016/j.cell.2018.07.005
• 发表时间: 2018-08-09
• 期刊: Cell
• 影响因子: 64.5
• 作者: Zhang L;Serra-Cardona A;Zhou H;Wang M;Yang N;Zhang Z;Xu RM
• 通讯作者: Xu RM