A Comprehensive Approach to Identification of Autism Susceptibility Genes
鉴定自闭症易感基因的综合方法
基本信息
- 批准号:7597202
- 负责人:
- 金额:$ 289.55万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2008
- 资助国家:美国
- 起止时间:2008-04-01 至 2013-01-31
- 项目状态:已结题
- 来源:
- 关键词:AddressAffectAfrican AmericanAllelesAutistic DisorderBiocompatible MaterialsBioinformaticsCandidate Disease GeneCell LineChildhoodChromosome abnormalityChromosomes, Human, Pair 17ClassificationCodeCollectionCommunicationCommunitiesComplexCopy Number PolymorphismCytogeneticsDNA ResequencingDataData Coordinating CenterDatabasesDetectionDiagnosisDiseaseEtiologyEuropeanFamilyFamily memberFluorescent in Situ HybridizationFoundationsFragile X SyndromeFunctional RNAFunctional disorderFundingGene CombinationsGenesGeneticGenetic HeterogeneityGenetic VariationGenomeGenome ScanGenotypeHaplotypesHead circumferenceHeterogeneityIncidenceInternetInvestigationLanguageLanguage DelaysLiteratureMapsMethodsMicrosatellite RepeatsMicroscopicMinorityMolecularMutationNational Institute of Mental HealthOnline SystemsParentsPathway AnalysisPathway interactionsPhenotypePopulationPredispositionProteinsPublishingResearchResearch PersonnelResolutionResourcesSNP genotypingSample SizeSamplingSiblingsSignal TransductionSiteStagingStratificationSusceptibility GeneSyndromeTestingUpdateVariantWorkautism spectrum disorderbasecohortcomparative genomic hybridizationcost effectivedata exchangedelay sexendophenotypefollow-upgene interactiongenetic analysisgenetic resourcegenetic risk factorgenetic variantgenome wide association studygenome-wideneuropsychiatrypositional cloningprobandprogramssexsocial communication
项目摘要
DESCRIPTION (provided by applicant): Autism is a devastating neuropsychiatric condition with unknown pathophysiology. Autism spectrum disorders (ASD) have an estimated incidence of 1/200 and thus are more common than many other childhood disorders. Although ASD have a multifactorial etiology, it has a large genetic component. It is also becoming clear that comprehensive efforts involving large sample sizes and methods to reduce heterogeneity are necessary to achieve maximal power to identify disease critical regions narrow enough to permit positional cloning of autism susceptibility genes. The investigators in this application aim to continue their collaborative effort that has produced and enhanced a highly successful open data and biomaterials resource for the research community, the Autism Genetic Resource Exchange (AGRE). This collaborative network application involving six research sites and the AGRE DCC, will systematically and comprehensively investigate the genetics of ASD to identify rare mutations, chromosomal abnormalities, and common variation contributing to ASD susceptibility. Specifically, they will enrich existing resources by adding 400 simplex families, including 200 families of African American descent, in addition to phenotype enrichment. The large overall sample size permits stratification of families based on analysis of heritable quantitative and qualitative endophenotypes. It further allows independent confirmation of loci as demonstrated for chromosome 17 and provides adequate sample for whole genome association studies to find loci with adequate power. The investigators will perform follow up linkage studies to confirm several new loci identified based on autism-related endophenotypes or co- variants, such as language delay, sex, and head circumference. In parallel, comparative genomic hybridization (CGH) using 500k SNP arrays will be performed, yielding the highest resolution molecular karyotypes and providing a resource on genome wide copy number variation (CNV) in ASD. CNV identified will be followed in family members and controls using QPCR and FISH. The use of SNP genotyping for CNV detection in ASD probands further provides for significant economies, since additional genotyping need only be conducted in the parents for efficient whole genome association studies. Regions or genes identified by linkage will be followed up by efficient, staged dense SNP genotyping. CNV assessment and WGA will also yield candidates that will be integrated with the linkage results for focused confirmatory studies, including re-sequencing to identify and confirm potentially causal genetic variants. Genetic risk factors identified in the mostly white European sample will be tested for association in the African American sample to determine whether these cohorts share the same genetic risk factors. All phenotypic and genotype data will be made accessible via the Internet on a rolling basis, including minority families, further enhancing the value of this resource to the community.
描述(由申请人提供):自闭症是一种具有未知病理生理学的毁灭性神经精神病疾病。 自闭症谱系障碍(ASD)的估计发病率为1/200,因此比许多其他儿童疾病更为普遍。 尽管ASD具有多因素病因,但它具有较大的遗传成分。 同样,还需要清楚的是,涉及大量样本量和减少异质性的方法的全面努力对于达到最大能力以识别疾病关键区域的最大能力是必要的,以允许自闭症易感基因的位置克隆。 本申请中的研究人员旨在继续他们的协作努力,并为研究社区(自闭症遗传资源交换(CLES))生产并增强了非常成功的开放数据和生物材料资源。 这种涉及六个研究站点和协议DCC的协作网络应用将系统,全面地研究ASD的遗传学,以鉴定罕见的突变,染色体异常和常见变异,并导致ASD易感性。 具体而言,除了表型富集外,他们还将增加400个单纯族家庭(包括200个非裔美国人血统的家庭)来丰富现有资源。 大量的总体样本量允许基于对可遗传定量和定性内表型的分析进行分层。 它进一步允许独立确认基因座,如染色体17所证明的,并为整个基因组关联研究提供了足够的样品,以找到具有足够功率的基因座。 研究人员将进行后续联系研究,以确认基于自闭症相关的内型型或co的几个新基因座,例如语言延迟,性别和头围。 同时,将执行使用500K SNP阵列的比较基因组杂交(CGH),从而产生最高分辨率的分子核型,并在ASD中提供有关基因组宽拷贝数(CNV)的资源。 使用QPCR和FISH的家庭成员和对照中,将遵循确定的CNV。 在ASD概率中,使用SNP基因分型在CNV检测中进一步提供了重要的经济体,因为仅需要在父母中进行额外的基因分型来进行有效的整个基因组关联研究。 通过链接确定的区域或基因将以有效的,密集的SNP基因分型为之后。 CNV评估和WGA还将产生候选者,这些候选者将与重点验证性研究的联系结果整合在一起,包括重新续订以识别和证实潜在的因果遗传变异。 在非裔美国人样本中,将测试大多数欧洲白人样本中确定的遗传危险因素,以确定这些同龄人是否具有相同的遗传危险因素。 所有表型和基因型数据都将在包括少数族裔家庭在内的互联网上通过互联网获取,从而进一步增强了该资源对社区的价值。
项目成果
期刊论文数量(0)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
数据更新时间:{{ journalArticles.updateTime }}
{{
item.title }}
{{ item.translation_title }}
- DOI:
{{ item.doi }} - 发表时间:
{{ item.publish_year }} - 期刊:
- 影响因子:{{ item.factor }}
- 作者:
{{ item.authors }} - 通讯作者:
{{ item.author }}
数据更新时间:{{ journalArticles.updateTime }}
{{ item.title }}
- 作者:
{{ item.author }}
数据更新时间:{{ monograph.updateTime }}
{{ item.title }}
- 作者:
{{ item.author }}
数据更新时间:{{ sciAawards.updateTime }}
{{ item.title }}
- 作者:
{{ item.author }}
数据更新时间:{{ conferencePapers.updateTime }}
{{ item.title }}
- 作者:
{{ item.author }}
数据更新时间:{{ patent.updateTime }}
DANIEL H GESCHWIND其他文献
DANIEL H GESCHWIND的其他文献
{{
item.title }}
{{ item.translation_title }}
- DOI:
{{ item.doi }} - 发表时间:
{{ item.publish_year }} - 期刊:
- 影响因子:{{ item.factor }}
- 作者:
{{ item.authors }} - 通讯作者:
{{ item.author }}
{{ truncateString('DANIEL H GESCHWIND', 18)}}的其他基金
Project 2: Impact of H1/H2 haplotypes on cellular disease-associated phenotypes driven by FTD-causing MAPT mutations
项目 2:H1/H2 单倍型对 FTD 引起的 MAPT 突变驱动的细胞疾病相关表型的影响
- 批准号:
10834336 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
UCLA High-Throughput Neuropsychiatric Disorder Phenotyping Center (UCLA HT-NPC)
加州大学洛杉矶分校高通量神经精神疾病表型中心 (UCLA HT-NPC)
- 批准号:
10643541 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
Uncovering the Genetic Mechanisms of the Chromosome 17q21.31 Tau Haplotype on Neurodegeneration Risk in FTD and PSP
揭示染色体 17q21.31 Tau 单倍型对 FTD 和 PSP 神经变性风险的遗传机制
- 批准号:
10789246 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
Project 2: Impact of H1/H2 haplotypes on cellular disease-associated phenotypes driven by FTD-causing MAPT mutations
项目 2:H1/H2 单倍型对 FTD 引起的 MAPT 突变驱动的细胞疾病相关表型的影响
- 批准号:
10295518 - 财政年份:2021
- 资助金额:
$ 289.55万 - 项目类别:
Uncovering the genetic mechanisms of the Chromosome 17q21.31 Tau haplotype on neurodegeneration risk in FTD and PSP
揭示染色体 17q21.31 Tau 单倍型对 FTD 和 PSP 神经变性风险的遗传机制
- 批准号:
10902613 - 财政年份:2021
- 资助金额:
$ 289.55万 - 项目类别:
Uncovering the genetic mechanisms of the Chromosome 17q21.31 Tau haplotype on neurodegeneration risk in FTD and PSP
揭示染色体 17q21.31 Tau 单倍型对 FTD 和 PSP 神经变性风险的遗传机制
- 批准号:
10295512 - 财政年份:2021
- 资助金额:
$ 289.55万 - 项目类别:
High-throughput Modeling of Autism Risk Genes using Zebrafish - DIVERSITY SUPPLEMENT
使用斑马鱼对自闭症风险基因进行高通量建模 - 多样性补充
- 批准号:
10818861 - 财政年份:2020
- 资助金额:
$ 289.55万 - 项目类别:
High-throughput modeling of autism risk genes using zebrafish
使用斑马鱼进行自闭症风险基因的高通量建模
- 批准号:
10478187 - 财政年份:2020
- 资助金额:
$ 289.55万 - 项目类别:
High-throughput modeling of autism risk genes using zebrafish
使用斑马鱼进行自闭症风险基因的高通量建模
- 批准号:
10121604 - 财政年份:2020
- 资助金额:
$ 289.55万 - 项目类别:
High-throughput modeling of autism risk genes using zebrafish
使用斑马鱼进行自闭症风险基因的高通量建模
- 批准号:
10264069 - 财政年份:2020
- 资助金额:
$ 289.55万 - 项目类别:
相似国自然基金
海洋缺氧对持久性有机污染物入海后降解行为的影响
- 批准号:42377396
- 批准年份:2023
- 资助金额:49 万元
- 项目类别:面上项目
氮磷的可获得性对拟柱孢藻水华毒性的影响和调控机制
- 批准号:32371616
- 批准年份:2023
- 资助金额:50 万元
- 项目类别:面上项目
还原条件下铜基催化剂表面供-受电子作用表征及其对CO2电催化反应的影响
- 批准号:22379027
- 批准年份:2023
- 资助金额:50 万元
- 项目类别:面上项目
CCT2分泌与内吞的机制及其对毒性蛋白聚集体传递的影响
- 批准号:32300624
- 批准年份:2023
- 资助金额:10 万元
- 项目类别:青年科学基金项目
在轨扰动影响下空间燃料电池系统的流动沸腾传质机理与抗扰控制研究
- 批准号:52377215
- 批准年份:2023
- 资助金额:50 万元
- 项目类别:面上项目
相似海外基金
Role of YB1 in health disparities in triple negative breast cancer
YB1 在三阴性乳腺癌健康差异中的作用
- 批准号:
10655943 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
The Meharry Cancer Summer Research Program (SuRP)
梅哈里癌症夏季研究计划 (SuRP)
- 批准号:
10715291 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
The role of the contextual food environment and community programs and policies on diet and dietary disparities in the national Healthy Communities Study
背景食物环境和社区计划以及饮食政策和饮食差异在国家健康社区研究中的作用
- 批准号:
10730780 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
Enhanced Medication Management to Control ADRD Risk Factors Among African Americans and Latinos
加强药物管理以控制非裔美国人和拉丁裔的 ADRD 风险因素
- 批准号:
10610975 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别:
International Conference on Cancer Health Disparities
国际癌症健康差异会议
- 批准号:
10606212 - 财政年份:2023
- 资助金额:
$ 289.55万 - 项目类别: