Project 2: Ex Vivo Modeling and Analysis of Gastric Precancerous Lesions

项目2：胃癌前病变的离体建模与分析

• 批准号: 10715763
• 负责人: MANUEL R AMIEVA
• 金额: $ 32.26万
• 依托单位: STANFORD UNIVERSITY
• 依托单位国家: 美国
• 财政年份: 2023
• 资助国家: 美国
• 起止时间: 2023-09-20 至 2028-08-31
• 项目状态: 未结题
• 来源: https://reporter.nih.gov/project-details/10715763
• 关键词: 3-Dimensional; Address; Anatomy; Antibiotics; Apical; Atrophic; Bacterial Genes; Basic Science; Behavior; Biological; Biology; Biopsy; Cancer Etiology; Carcinoma; Categories; Cell Communication; Cell Polarity; Cell model; Cells; Cellular biology; Cessation of life; Characteristics; Chronic; Clustered Regularly Interspaced Short Palindromic Repeats; Collection; Confocal Microscopy; Correa cascade; DNA Sequence Alteration; Data; Development; Disease Progression; Dysplasia; Endoscopic Biopsy; Epithelial Cells; Epithelium; Experimental Models; Exposure to; Gastric Glands; Gastric Tissue; Gastritis; Gene Expression; Gene Expression Profile; Genes; Genomics; Genotype; Gland; Growth; Helicobacter Infections; Helicobacter pylori; Human; Immune response; In Situ; In Vitro; Infection; Inflammation; Inflammatory; Intestines; Laboratory Research; Lesion; Libraries; Location; Malignant Neoplasms; Measures; Methods; Microscopy; Modeling; Molecular; Monitor; Mutation; Organoids; Pathogenesis; Patients; Peptide Initiation Factors; Persons; Phenotype; Precancerous Conditions; Process; Property; Quantitative Microscopy; Recrudescences; Research; Research Personnel; Resolution; Resources; Risk; Risk Factors; Risk Marker; Role; Sampling; Site; Stomach; Stomach Carcinoma; Surface; System; Techniques; Testing; Time; Tissue Model; Tissues; Tumor Stem Cells; Virulence Factors; Visualization; carcinogenesis; chronic infection; epithelial stem cell; experimental study; fitness; gastric intestinal metaplasia; gastric organoids; genetic selection; high risk; human tissue; improved; insight; malignant stomach neoplasm; mortality; neoplastic; next generation sequencing; novel; premalignant; programs; response; risk stratification; single-cell RNA sequencing; stem; stem cell niche; stem cell population; stem cells; tissue culture; tumor progression; 3-Dimensional; Address; Anatomy; Antibiotics; Apical; Atrophic; Bacterial Genes; Basic Science; Behavior; Biological; Biology; Biopsy; Cancer Etiology; Carcinoma; Categories; Cell Communication; Cell Polarity; Cell model; Cells; Cellular biology; Cessation of life; Characteristics; Chronic; Clustered Regularly Interspaced Short Palindromic Repeats; Collection; Confocal Microscopy; Correa cascade; DNA Sequence Alteration; Data; Development; Disease Progression; Dysplasia; Endoscopic Biopsy; Epithelial Cells; Epithelium; Experimental Models; Exposure to; Gastric Glands; Gastric Tissue; Gastritis; Gene Expression; Gene Expression Profile; Genes; Genomics; Genotype; Gland; Growth; Helicobacter Infections; Helicobacter pylori; Human; Immune response; In Situ; In Vitro; Infection; Inflammation; Inflammatory; Intestines; Laboratory Research; Lesion; Libraries; Location; Malignant Neoplasms; Measures; Methods; Microscopy; Modeling; Molecular; Monitor; Mutation; Organoids; Pathogenesis; Patients; Peptide Initiation Factors; Persons; Phenotype; Precancerous Conditions; Process; Property; Quantitative Microscopy; Recrudescences; Research; Research Personnel; Resolution; Resources; Risk; Risk Factors; Risk Marker; Role; Sampling; Site; Stomach; Stomach Carcinoma; Surface; System; Techniques; Testing; Time; Tissue Model; Tissues; Tumor Stem Cells; Virulence Factors; Visualization; carcinogenesis; chronic infection; epithelial stem cell; experimental study; fitness; gastric intestinal metaplasia; gastric organoids; genetic selection; high risk; human tissue; improved; insight; malignant stomach neoplasm; mortality; neoplastic; next generation sequencing; novel; premalignant; programs; response; risk stratification; single-cell RNA sequencing; stem; stem cell niche; stem cell population; stem cells; tissue culture; tumor progression

ABSTRACT – PROJECT 2 The central purpose of Project 2 is to utilize a primary human tissue model to investigate the features of gastric stem cells and how the cells interact with Helicobacter pylori (Hp). Hp commonly triggers an inflammatory process that leads to gastric intestinal metaplasia (GIM), a condition that can evolve into invasive carcinoma. However, not all people with GIM develop gastric cancer. This project proposes an experimental platform to investigate the features of high-risk GIM. Its hypothesis is that high-risk GIM lesions possess epithelial stem cells with unique properties predisposed to neoplastic progression, especially in the setting of Hp infection. Project 2 has three aims to investigate this hypothesis: (1) Characterizing the epithelial progenitor cells of high-risk GIM. (2) Modeling genomic alterations from high-risk GIM. (3) Elucidating interactions between Hp and gastric organoids from high-risk GIM. For Aim 1, Dr. Amieva’s group will develop a library of stem-cell rich, apical-out gastric organoids representing the gastric neoplastic spectrum across various topographical locations in the stomach. The characteristics of these stem cell organoids will be identifying using next generation sequencing and advanced microscopy. In Aim 2, the organoids will be perturbed with select genetic alterations (identified in Project 1) through CRISPR gene editing. Subsequent changes to gene expression may provide insight into the biology of high-risk versus low-risk GIM tissues. Lastly in Aim 3, the investigators will infect apical-out gastric organoids (from Aim 1) with human-derived Hp strains of known genotypes and phenotypes. Single-cell genomics will allow investigators to distinguish the unique transcriptional profiles of organoids at different time points, states of infection and inflammation, and enable studies into bacterial genes that are crucial for colonization and host perturbations. While Project 2 will be conducted in a basic research laboratory, its aims and results are directly related to improving overall understanding of Hp behavior in the human stomach, and molecular changes that prime tissue for carcinogenesis.

摘要 - 项目2 项目2的核心目的是利用主要的人体组织模型来研究胃的特征 干细胞以及细胞如何与幽门螺杆菌（HP）相互作用。惠普通常会触发炎症 导致胃肠道化生（GIM）的过程，这种疾病可以演变为浸润性癌。 但是，并非所有患有GIM的人都患有胃癌。该项目提出了一个实验平台 研究高风险GIM的特征。它的假设是高风险的GIM病变具有上皮干细胞 具有独特的特性，易于肿瘤进展，尤其是在HP感染的情况下。项目2 有三个目的来研究这一假设： （1）表征高风险GIM的上皮祖细胞。 （2）对高风险GIM的基因组改变进行建模。 （3）从高危GIM中阐明了HP和胃类细胞器之间的相互作用。 对于AIM 1，Amieva博士的小组将开发一个代表的富含干细胞，顶的胃癌的库 胃部各个地形位置的胃肿瘤谱。的特征 这些干细胞器官将使用下一代测序和晚期显微镜识别。 AIM 2，通过CRISPR的精选遗传改变（在项目1中识别）会扰动类器官 基因编辑。随后对基因表达的变化可能会洞悉高风险与高风险的生物学 低风险的GIM组织。最后，在AIM 3中，研究人员将与AIM 1（AIM 1）感染顶端的胃癌 已知基因型和表型的人类衍生的HP菌株。单细胞基因组学将使研究人员能够 在不同时间点，感染状态和 炎症，并能够研究对定植和宿主扰动至关重要的细菌基因。 虽然项目2将在基础研究实验室进行，但其目标和结果与 提高对人胃中HP行为的总体理解，并改善本组织的分子变化 用于致癌。