Acquisition of an Additional Mixed CPU/GPU Computational Node at the CUNY HPCC

在 CUNY HPCC 购买额外的混合 CPU/GPU 计算节点

基本信息

批准号：
10801797
负责人：
Sharon Marie Loverde
金额：
$ 9.11万
依托单位：
COLLEGE OF STATEN ISLAND
依托单位国家：
美国
项目类别：
财政年份：
2022
资助国家：
美国
起止时间：
2022-06-01 至 2025-05-31
项目状态：
未结题

来源：
https://reporter.nih.gov/project-details/10801797
关键词：
Base Sequence Biochemistry Biophysics Chemistry Cities DNA Equipment Grant High Performance Computing Histones Island Location Malignant Neoplasms Molecular Molecular Computations Mutation New York Nucleosome Core Particle Nucleosomes Oncogenic Post-Translational Modification Site Post-Translational Protein Processing Research Project Grants Structure System Techniques Testing Universities college computer science graduate student human disease insight method development models and simulation simulation success undergraduate student

Base Sequence Biochemistry Biophysics Chemistry Cities DNA Equipment Grant High Performance Computing Histones Island Location Malignant Neoplasms Molecular Molecular Computations Mutation New York Nucleosome Core Particle Nucleosomes Oncogenic Post-Translational Modification Site Post-Translational Protein Processing Research Project Grants Structure System Techniques Testing Universities college computer science graduate student human disease insight method development models and simulation simulation success undergraduate student

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项目摘要

This is a supplemental proposal to obtain additional computational equipment to be stored in the City University of New York (CUNY) High Performance Computing Center (HPCC) in support of grant 1R15GM146228-01. The CUNY HPCC is located at the College of Staten Island, which is the location of the PI. The original proposal focuses on the development of methods to characterize the structure and dynamics of the nucleosome core particle, focusing on nucleic acid sequence, posttranslational modifications, and oncogenic mutations. The obtainment of additional computational equipment at the HPCC is critical to the success of this grant. As discussed in the proposal, the atomistic simulations and system sizes require access to computational nodes with multiple GPUs (graphics processing units). This grant will support multiple undergraduate students during the summer and the academic year. Exposure of undergraduate and graduate students (in Chemistry, Biochemistry, and Computer Science) to advanced computational equipment at the CUNY HPCC will promote the success of their research projects in computational molecular biophysics.

这是一项补充提议约克（CUNY）高性能计算中心（HPCC）支持赠款15GM146228-01。 CUNY HPCC 位于PI的位置，位于史坦顿岛学院。最初的提议着重于开发方法以表征核小体核心粒子的结构和动力学，重点是核。酸序列，翻译后修饰和致癌突变。获得其他计算 HPCC的设备对于这笔赠款的成功至关重要。如提案中所述，原子模拟和系统尺寸需要访问具有多个GPU（图形处理单元）的计算节点。这笔赠款将在夏季和学年支持多个本科生。大学生和研究生（化学，生物化学和计算机科学领域） CUNY HPCC将促进其在计算分子生物物理学方面的研究项目的成功。