Genetic and structural analysis of L,L-diaminopimelate aminotransferase (DapL): An attractive target for the development of narrow-spectrum antibiotics
L,L-二氨基庚二酸转氨酶 (DapL) 的遗传和结构分析:窄谱抗生素开发的一个有吸引力的靶点
基本信息
- 批准号:9513721
- 负责人:
- 金额:$ 3.08万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2016
- 资助国家:美国
- 起止时间:2016-09-06 至 2020-12-31
- 项目状态:已结题
- 来源:
- 关键词:AffectAmino AcidsAnabolismAnimalsAntibiotic ResistanceAntibioticsBacteriaBacterial GenomeBindingCell WallCenters for Disease Control and Prevention (U.S.)Cessation of lifeChlamydiaChlamydia trachomatisComplementDataDevelopmentEnzymesEssential GenesEubacteriumFoundationsFutureGenerationsGenesGeneticGenomeGenotypeGoalsGram-Negative BacteriaHealthHumanHuman GenomeIn VitroIncubatedIntermediate resistanceLeadLysineLysine Biosynthesis PathwayMethodsModelingMorbidity - disease rateMulti-Drug ResistanceMutagenesisMutationMycobacterium tuberculosisOrganismOutcomePathogenicityPathway interactionsPatientsPeptidoglycanPhenotypeProtein BiosynthesisPseudomonas aeruginosaReactionResearchRoleSexually Transmitted DiseasesSpecificityStaphylococcus aureusSystemTestingTransaminasesVancomycinVariantWorkX-Ray Crystallographyaminoacid biosynthesisanalytical ultracentrifugationbacterial resistancebactericidebasebiophysical propertiesbiophysical techniquescombatcrosslinkdisorder preventiondosageexperimental studygene replacementhuman mortalityin vitro Assayin vivoinhibitor/antagonistinterestmethicillin resistant Staphylococcus aureusmortalitymutantnovelpathogenic bacteriaresistant strain
项目摘要
PROJECT SUMMARY/ABSTRACT
The overarching goal of this proposal is to assess the essentiality of L,L-diaminopimelate
aminotransferase in pathogenic bacteria to facilitate the development of antibiotics. There is an urgent need
for the development of novel antibiotics to combat the drastic rise in the number of antibiotic resistant
bacteria. One of the bottlenecks that is impeding the development of antibiotics is the identification of novel
enzymatic targets. The PI recently identified and elucidated a novel variant of the diaminopimelate/lysine
biosynthesis pathway by identifying and characterizing the enzyme L,L-diaminopimelate aminotransferase. In
pathogenic bacteria, such as Chlamydia trachomatis, diaminopimelate aminotransferase catalyzes a specific
reaction in the diaminopimelate/lysine anabolic pathway that is necessary for both cell wall peptidoglycan and
amino acid protein synthesis. The genomes of animals, particularly humans, do not contain the genetic
machinery necessary to facilitate the synthesis of diaminopimelate/lysine. As such, the enzymes in this
pathway are attractive targets for novel antibiotics.
We hypothesize that inhibition of diaminopimelate aminotransferase in the pathogenic
bacteria will cause a bactericidal effect through inhibition of peptidoglycan synthesis and
protein synthesis. This is because 1) the intermediate meso-diaminopimelate/lysine serves a cross-linking
amino acid in the peptidoglycan of bacteria and 2) lysine is one of the 20 common proteogenic amino acids.
The proposed research is significant since we will assess the essentiality of the dapL gene in the Gram-
negative bacterium Verrucomicrobium spinosum, the closest free living relative of Chlamydia, the causative
bacterium in the sexually transmitted disease “Chlamydia”. V. spinosum was chosen as a model because it
employs the diaminopimelate aminotransferase pathway as the sole pathway for peptidoglycan and lysine
biosynthesis. The organism is not pathogenic and it can be genetically manipulated. To test if diaminopimelate
aminotransferase is a feasible target for the development of novel antibiotics we have delineated three aims. 1)
We will assess the essentiality of diaminopimelate aminotransferase in eubacteria using the V. spinosum as a
model using mutagenesis experiments employing transposon and/or gene replacement of the dapL gene. 2)
Recent studies from PI’s lab have identified antagonistic lead compounds towards diaminopimelate
aminotransferase using in vitro assays. As such, we will discern the specificity of these compounds using a in
vivo system where we will use V. spinosum wild type and diaminopimelate aminotransferase mutants to assess
if these identified compounds are specific for diaminopimelate aminotransferase and 3) The final aim of the
project will identify the amino acids that are involved in the binding of antagonistic compounds by incubating
the enzyme with these compounds followed by structural analyses facilitated by X-ray crystallography, which
will underpin the development of second generation inhibitors.
项目摘要/摘要
该提案的总体目标是评估L,l-二氨基二亚匹配的本质
致病细菌中的氨基转移酶,以促进抗生素的发展。迫切需要
为了开发新型抗生素,以抵抗抗生素耐药性数量的急剧上升
细菌。阻碍抗生素发展的瓶颈之一是新颖的识别
酶促靶标。 PI最近鉴定并阐明了二氨基二二酰胺/赖氨酸的新型变体
通过鉴定和表征酶L,l-二氨基二酰胺氨基转移酶的生物合成途径。
致病细菌,例如沙眼衣原体,二氨基二粘酸酯氨基转移酶催化特定
在细胞壁辣椒和二氨基二二二二二二二二酰胺酸盐/赖氨酸合成代谢途径中的反应
氨基酸蛋白合成。动物,尤其是人类的基因组不包含遗传
促进二氨基二二酰胺/赖氨酸的合成所需的机械。因此,其中的酶
途径是新型抗生素的有吸引力的靶标。
我们假设抑制致病性二氨基二二二二二二氨基氨基转移酶
细菌将通过抑制PepperyDoglycan合成和
蛋白质合成。这是因为1)中间中间二氨基二二二二胺/赖氨酸交联链接
细菌的辣聚糖中的氨基酸和2)赖氨酸是20种常见的蛋白质氨基酸之一。
拟议的研究很重要,因为我们将评估DAPL基因在革兰氏集中的重要性
阴性细菌verrucomicrobium spinosum,是衣原体的最接近的自由生活亲戚,是病因
性传播疾病“衣原体”中的细菌。 V. Spinosum被选为模型,因为它
采用二氨基二键二二酰氨基转移酶途径作为辣椒和赖氨酸的唯一途径
生物合成。该生物不是致病性的,可以在遗传上操纵。测试二氨基二二二二次
氨基转移酶是开发新型抗生素的可行靶标,我们描述了三个目标。 1)
我们将使用V. spinosum作为A作为A
使用诱变实验的模型,该实验采用了转座子和/或基因替代DAPL基因的模型。 2)
PI实验室的最新研究已经确定了拮抗铅化合物对二氨基二键型的化合物
氨基转移酶使用体外测定法。因此,我们将使用A中辨别这些化合物的特异性
体内系统,我们将使用V.脊柱野生型和二氨基二键型氨基转移酶突变体进行评估
如果这些已鉴定的化合物特异性是二氨基二二键二氨基转移酶的特异性,那么3)
项目将通过孵化来鉴定拮抗化合物结合的氨基酸
具有这些化合物的酶,然后是通过X射线晶体学制备的结构分析,
将支持第二代抑制剂的发展。
项目成果
期刊论文数量(12)
专著数量(0)
科研奖励数量(0)
会议论文数量(0)
专利数量(0)
Amino acid-derived defense metabolites from plants: A potential source to facilitate novel antimicrobial development.
- DOI:10.1016/j.jbc.2021.100438
- 发表时间:2021-01
- 期刊:
- 影响因子:0
- 作者:Parthasarathy A;Borrego EJ;Savka MA;Dobson RCJ;Hudson AO
- 通讯作者:Hudson AO
Structure-Function Studies of the Antibiotic Target l,l-Diaminopimelate Aminotransferase from Verrucomicrobium spinosum Reveal an Unusual Oligomeric Structure.
来自刺疣微菌 (Verrucomicrobium spinosum) 的抗生素靶点 l,l-二氨基庚二酸转氨酶的结构-功能研究揭示了一种不寻常的寡聚结构。
- DOI:10.1021/acs.biochem.0c00185
- 发表时间:2020
- 期刊:
- 影响因子:2.9
- 作者:Weatherhead,AnthonyW;Crowther,JenniferM;Horne,ChristopherR;Meng,Yanxiang;Coombes,David;Currie,MichaelJ;Watkin,SerenaAJ;Adams,LilyE;Parthasarathy,Anutthaman;Dobson,RenwickCJ;Hudson,AndréO
- 通讯作者:Hudson,AndréO
Comparative Molecular Dynamics Simulations Provide Insight Into Antibiotic Interactions: A Case Study Using the Enzyme L,L-Diaminopimelate Aminotransferase (DapL).
比较分子动力学模拟深入了解抗生素相互作用:使用 L,L-二氨基庚二酸氨基转移酶 (DapL) 的案例研究。
- DOI:10.3389/fmolb.2020.00046
- 发表时间:2020
- 期刊:
- 影响因子:5
- 作者:Adams,LilyE;Rynkiewicz,Patrick;Babbitt,GregoryA;Mortensen,JamieS;North,RachelA;Dobson,RenwickCJ;Hudson,AndréO
- 通讯作者:Hudson,AndréO
Creation of an electrokinetic characterization library for the detection and identification of biological cells
- DOI:10.1007/s00216-020-02621-9
- 发表时间:2020-04-22
- 期刊:
- 影响因子:4.3
- 作者:De Pena, Adriana Coll;Miller, Abbi;Lapizco-Encinas, Blanca H.
- 通讯作者:Lapizco-Encinas, Blanca H.
A Three-Ring Circus: Metabolism of the Three Proteogenic Aromatic Amino Acids and Their Role in the Health of Plants and Animals.
- DOI:10.3389/fmolb.2018.00029
- 发表时间:2018
- 期刊:
- 影响因子:5
- 作者:Parthasarathy A;Cross PJ;Dobson RCJ;Adams LE;Savka MA;Hudson AO
- 通讯作者:Hudson AO
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ANDRE O HUDSON其他文献
ANDRE O HUDSON的其他文献
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{{ truncateString('ANDRE O HUDSON', 18)}}的其他基金
Isolation, identification and characterization of potentially novel antibiotics from rhizospheric bacteria without detectable in vitro resistance
从根际细菌中分离、鉴定和表征潜在的新型抗生素,且体外未检测到耐药性
- 批准号:
10581945 - 财政年份:2021
- 资助金额:
$ 3.08万 - 项目类别:
Isolation, identification and characterization of potentially novel antibiotics from rhizospheric bacteria without detectable in vitro resistance
从根际细菌中分离、鉴定和表征潜在的新型抗生素,且体外未检测到耐药性
- 批准号:
10358855 - 财政年份:2021
- 资助金额:
$ 3.08万 - 项目类别:
Genetic and structural analysis of L,L-diaminopimelate aminotransferase (DapL): An attractive target for the development of narrow-spectrum antibiotics
L,L-二氨基庚二酸转氨酶 (DapL) 的遗传和结构分析:窄谱抗生素开发的一个有吸引力的靶点
- 批准号:
9171013 - 财政年份:2016
- 资助金额:
$ 3.08万 - 项目类别:
Doctoral Training/Biochemistry/Transsulfuration Enzymes
博士培训/生物化学/转硫酶
- 批准号:
6935820 - 财政年份:2003
- 资助金额:
$ 3.08万 - 项目类别:
Doctoral Training/Biochemistry/Transsulfuration Enzymes
博士培训/生物化学/转硫酶
- 批准号:
6784030 - 财政年份:2003
- 资助金额:
$ 3.08万 - 项目类别:
Doctoral Training/Biochemistry/Transsulfuration Enzymes
博士培训/生物化学/转硫酶
- 批准号:
6695311 - 财政年份:2003
- 资助金额:
$ 3.08万 - 项目类别:
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