Structure and function of membrane receptor signaling complex in bacterial chemot

细菌趋化细胞膜受体信号复合物的结构和功能

基本信息

批准号：
8520324
负责人：
Peijun Zhang
金额：
$ 26.43万
依托单位：
UNIVERSITY OF PITTSBURGH AT PITTSBURGH
依托单位国家：
美国
项目类别：
财政年份：
2009
资助国家：
美国
起止时间：
2009-08-17 至 2017-07-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/8520324
关键词：
Affect Architecture Area Binding Biochemical Biological Assay Biological Models Biology Cell Differentiation process Cells Chemicals Chemoreceptors Chemotaxis Circadian Rhythms Complex Computer Simulation Coupling Cryoelectron Microscopy Development Docking Environment Enzymes Escherichia coli Eukaryotic Cell Flagella Foundations Health Histidine In Vitro Individual Infection Ligand Binding Ligands Maps Mediating Medicine Membrane Membrane Structure and Function Methods Modeling Modification Molecular Molecular Conformation Molecular Models Monitor Motor Mutagenesis Nature Pathogenesis Phosphotransferases Plants Play Process Prokaryotic Cells Proteins Receptor Activation Receptor Signaling Resolution Response to stimulus physiology Role Rotation Sensory Signal Pathway Signal Transduction Signal Transduction Pathway Signaling Molecule Site-Directed Mutagenesis Stimulus Structural Models Structure System Testing antimicrobial drug cell motility chemical binding computerized data processing crosslink drug development electron crystallography electron tomography in vivo insight interest microorganism molecular modeling novel pathogen protein-histidine kinase receptor reconstitution response scaffold three dimensional structure

项目摘要

DESCRIPTION (provided by applicant): Bacterial cells respond to the changes in their chemical environment (chemotaxis) by binding of the chemical ligand to membrane receptors, activating the multi-protein receptor signaling complex, and generating a diffusible intracellular signal that ultimately regulates the rotation of the flagella motor. The chemotactic signaling pathway in E. coli has emerged as the best-characterized signal transduction network in biology. All the protein components responsible for excitation and adaptation have been identified and characterized, and their soluble domain structures determined to atomic resolution. There have also been numerous mutagenesis, chemical cross-linking and GFP-tagging studies on chemotaxis signaling. However, the structures of the basic signaling unit consisting of the receptor, the kinase CheA and coupling protein CheW, that are essential to understand the molecular mechanism of the signal transduction remain elusive. The studies described in this proposal are targeted to obtaining high resolution structures of the ternary receptor signaling complex, as well as structures of its higher order assembly in intact cells, primarily by high resolution three-dimensional cryo- electron microscopy. We will also characterize the conformational changes of the complex upon receptor activation/inactivation using both structural methods and functional assays. These structures, combining with functional and biochemical analysis, are expected to provide a detailed understanding on how minute external chemical signals are transmitted to the histidine kinase and amplified through a large assembly of signaling complexes within the native cells. These results will also provide a foundation for generating computational models of receptor signaling systems, since the E. coli chemotaxis has been an ideal model system for understanding the molecular mechanisms of signal transduction and signal processing in general. PUBLIC HEALTH RELEVANCE: The mechanism of stimulus-response coupling in bacterial chemotaxis has emerged as a paradigm for understanding the principles of intracellular signal transduction both in bacterial and eukaryotic cells. E. coli chemotaxis is also a representative of the highly conserved "two-component systems" that control processes ranging from cell differentiation and development to circadian rhythms and pathogenesis in prokaryotes including both eubacterial and archaeal species. These systems all contain two central enzymes, a histidine protein kinase and a response regulator that mediates phosphor relay signal transduction networks in microorganisms and plants. In addition, bacterial chemotaxis response is crucial for colonization and infection, and the signal transduction systems that mediate such responses are potential targets for antimicrobial drug development. A deeper understanding of the mechanism of signaling in bacterial chemotaxis is therefore of great interests for many areas of biology and medicine. Our proposed efforts for a comprehensive and integrated structural and functional analysis of chemotaxis receptor signaling complexes and complex arrays will provide insight into receptor-kinase interaction, signaling complex formation, sensory cluster formation and conformation coupling, and contribute to a better understanding of the signal transduction and signal processing in general.

描述（由申请人提供）：细菌细胞通过将化学配体与膜受体结合、激活多蛋白受体信号复合物并产生最终调节旋转的可扩散细胞内信号来响应其化学环境的变化（趋化性）鞭毛马达。大肠杆菌中的趋化信号通路已成为生物学中最具特征的信号转导网络。所有负责激发和适应的蛋白质成分都已被鉴定和表征，并且它们的可溶性结构域结构被确定为原子分辨率。还有大量关于趋化信号传导的诱变、化学交联和 GFP 标记研究。然而，由受体、激酶 CheA 和偶联蛋白 CheW 组成的基本信号单元的结构，对于理解信号转导的分子机制至关重要，仍然难以捉摸。该提案中描述的研究旨在主要通过高分辨率三维冷冻电子显微镜获得三元受体信号复合物的高分辨率结构，以及完整细胞中其高级组装的结构。我们还将使用结构方法和功能测定来表征受体激活/失活时复合物的构象变化。这些结构与功能和生化分析相结合，有望详细了解微小的外部化学信号如何传递至组氨酸激酶，并通过天然细胞内的大量信号复合物组装进行放大。这些结果还将为生成受体信号系统的计算模型提供基础，因为大肠杆菌趋化性一直是理解信号转导和信号处理的分子机制的理想模型系统。公共健康相关性：细菌趋化性中的刺激-反应耦合机制已成为理解细菌和真核细胞细胞内信号转导原理的范例。大肠杆菌趋化性也是高度保守的“双组分系统”的代表，该系统控制着原核生物（包括真细菌和古细菌物种）从细胞分化和发育到昼夜节律和发病机制的过程。这些系统都包含两种中心酶，一种组氨酸蛋白激酶和一种介导微生物和植物中磷中继信号转导网络的反应调节剂。此外，细菌趋化反应对于定植和感染至关重要，介导此类反应的信号转导系统是抗菌药物开发的潜在目标。因此，更深入地了解细菌趋化性信号传导机制对于生物学和医学的许多领域都具有很大的意义。我们提出的对趋化受体信号复合物和复合体阵列进行全面综合结构和功能分析的努力将深入了解受体激酶相互作用、信号复合物形成、感觉簇形成和构象耦合，并有助于更好地理解信号转导和一般的信号处理。

项目成果

期刊论文数量（8）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Peptide-Directed Assembly of Single-Helical Gold Nanoparticle Superstructures Exhibiting Intense Chiroptical Activity.

肽定向组装单螺旋金纳米颗粒超结构，表现出强烈的手性光学活性。

DOI：
10.1021/jacs.6b07322
发表时间：
2016-10-19
期刊：
Journal of the American Chemical Society
影响因子：
15
作者：
Merg AD;Boatz JC;Mandal A;Zhao G;Mokashi-Punekar S;Liu C;Wang X;Zhang P;van der Wel PCA;Rosi NL
通讯作者：
Rosi NL

Low-dimensional nanoparticle clustering in polymer micelles and their transverse relaxivity rates.

聚合物胶束中的低维纳米颗粒聚集及其横向弛豫率。