Molecular mechanisms underlying human circadian sleep disorders

人类昼夜节律睡眠障碍的分子机制

基本信息

批准号：
10474631
负责人：
CHOOGON LEE
金额：
$ 30.31万
依托单位：
FLORIDA STATE UNIVERSITY
依托单位国家：
美国
项目类别：
财政年份：
2019
资助国家：
美国
起止时间：
2019-09-04 至 2024-08-31
项目状态：
已结题

来源：
https://reporter.nih.gov/project-details/10474631
关键词：
Accidents Advanced Sleep Phase Syndrome Affect Alleles Amino Acids Animal Model Biological Assay CRISPR/Cas technology Cell Culture Techniques Cell Line Cell model Cells Circadian Rhythms Clinical Clock protein Clustered Regularly Interspaced Short Palindromic Repeats Data Deubiquitination Dimerization Disease Enzymes Equilibrium Event Gene Pool Genes Genetic Genetic Variation Human Human Genome Individual Kinetics Laboratories Lead Length Libraries Link Malignant Neoplasms Mammals Mediating Metabolic Diseases Missense Mutation Modeling Molecular Mus Mutant Strains Mice Mutation Names Pathologic Patients Performance Performance at work Periodicity Phase Phenotype Phosphorylation Phosphotransferases Physiology Post-Translational Regulation Process Proteins Reaction Regulation Reporter Risk Role Single Nucleotide Polymorphism Site Sleep Disorders Sleep Wake Cycle System Testing Ubiquitination Variant Work Yeasts adverse outcome beta-Transducin Repeat-Containing Proteins circadian circadian pacemaker critical period effective therapy falls in vivo evaluation molecular modeling mouse model mutant novel polymerization repaired screening sleep quality trafficking ubiquitin-protein ligase

项目摘要

Project Summary/Abstract Adverse consequences from having a faulty circadian clock include compromised sleep quality, poor performance, and increased risk for accidents in the short-term, and metabolic diseases and cancer in the long-term. However, our understanding of circadian sleep disorders—and thus our ability to develop treatments for them—is limited by the incompleteness of our molecular models and our dearth of animal models. For example, many patients with circadian sleep disorders have wake-sleep cycles that shift daily in an unpredictable manner. Yet there were no animal models that emulated such unstable rhythms until our laboratory developed one in the last two years. There may be other human circadian disorders that go unrecognized or are poorly understood because our limited set of animal models fall far short of matching the diversity of the human gene pool. We propose to study a highly diverse set of mutations and single-nucleotide polymorphisms (SNPs) to elucidate their effect on circadian clock function. We would thus enhance the understanding of diverse chronotypes and sleep disorders in humans and pave the way for developing effective treatments. Specific Aim 1: Identify genetic variations in PER that may be associated with human circadian sleep disorders. Because it would be prohibitively expensive to use animal models to recapitulate all known SNPs and mutations in human clock genes, we will first characterize a large number of important variants in cell culture, using U2OS and MEFs, cell lines widely accepted as models for circadian rhythms. Our focus will be on SNPs or mutations in Period (Per) genes because Per1 and 2 are the most important mammalian genes in determining the clock’s period and phase, and hundreds of variants of each gene are known to exist. We will use the CRISPR/Cas9 technology to reproduce diverse variants in clock cells, and we will evaluate their circadian phenotypes. We have already identified a Per1 deletion mutant revealing a novel motif critical for phosphorylation, leading us to a novel hypothesis for how PER phosphorylation is dynamically regulated. We will test this hypothesis and continue to study other mechanisms of posttranslational regulation critical for the clock. We will also reproduce a select set of variants in mice for in vivo testing. Specific Aim 2: Identify key regulators of robust and timed proteasomal degradation of PER. Our previous and ongoing studies suggest that the circadian clock is dependent on rhythms of the core clock protein PER, and its proteasomal degradation is regulated by both ubiquitination and deubiquitination. We propose to conduct a systematic search for E3 ligases that regulate PER ubiquitination and degradation, and to test their function in cell models, along with the functions of candidate deubiquitnases. In Aim 1, we will identify key regulatory sites within PER, while in Aim 2, we will identify key enzymes involved in that regulation.

项目概要/摘要生物钟错误带来的不良后果包括睡眠质量下降、睡眠质量差、性能，短期内发生事故的风险增加，以及代谢性疾病和癌症的风险增加然而，从长远来看，我们对昼夜节律睡眠障碍的了解，以及我们开发治疗方法的能力。对他们来说——受到我们分子模型的不完整性和动物模型的深度的限制。例如，许多患有昼夜节律睡眠障碍的患者的觉醒-睡眠周期每天都会发生变化。然而，直到我们出现之前，还没有动物模型能够模拟这种不稳定的节律。实验室在过去两年中开发出了一种可能存在其他人类昼夜节律紊乱的疾病。未被识别或了解甚少，因为我们有限的动物模型远远不能匹配我们建议研究一组高度多样化的突变和单核苷酸。多态性（SNP）来阐明它们对生物钟功能的影响。了解人类不同的时间型和睡眠障碍，并为发展铺平道路有效的治疗。具体目标 1：识别可能与人类昼夜节律相关的 PER 遗传变异因为使用动物模型来概括所有已知的睡眠障碍的成本高昂。人类时钟基因的 SNP 和突变，我们将首先表征大量重要的变异细胞培养，使用 U2OS 和 MEF，细胞系被广泛接受为昼夜节律模型。位于周期 (Per) 基因的 SNP 或突变上，因为 Per1 和 2 是最重要的哺乳动物基因确定时钟的周期和相位，并且已知每个基因存在数百种变体。使用CRISPR/Cas9技术在时钟细胞中复制多种变异，我们将评估它们我们已经鉴定出 Per1 缺失突变体，揭示了一个对昼夜节律表型至关重要的新基序。磷酸化，使我们对 PER 磷酸化如何动态调节提出了一个新的假设。将测试这一假设并继续研究对翻译后调控至关重要的其他机制我们还将在小鼠中复制一组选定的变体以进行体内测试。具体目标 2：确定 PER 强力且定时的蛋白酶体降解的关键调节因子。先前和正在进行的研究表明，生物钟取决于核心时钟的节律蛋白质 PER 及其蛋白酶体降解受到泛素化和去泛素化的调节。提议对调节 PER 泛素化和降解的 E3 连接酶进行系统搜索，以及在目标 1 中，我们将测试它们在细胞模型中的功能以及候选去泛素酶的功能。确定 PER 内的关键调节位点，而在目标 2 中，我们将确定参与该调节的关键酶。

项目成果

期刊论文数量（4）

专著数量（0）

科研奖励数量（0）

会议论文数量（0）

专利数量（0）

Endogenous circadian reporters reveal functional differences of PERIOD paralogs and the significance of PERIOD:CK1 stable interaction.

内源性昼夜节律报告基因揭示了 PERIOD 旁系同源物的功能差异以及 PERIOD:CK1 稳定相互作用的意义。

DOI：
发表时间：
2023-02-07
期刊：
影响因子：
11.1
作者：
Park, Jiyoung;Lee, Kwangjun;Kim, Hyeongseok;Shin, Heungsop;Lee, Choogon
通讯作者：
Lee, Choogon

Generation of CRISPR-Cas9-mediated knockin mutant models in mice and MEFs for studies of polymorphism in clock genes.

在小鼠和 MEF 中生成 CRISPR-Cas9 介导的敲入突变模型，用于研究时钟基因的多态性。

DOI：
发表时间：
2023-05-19
期刊：
影响因子：
4.6
作者：
Lee, Kwangjun;Lee, Choogon
通讯作者：
Lee, Choogon

Wake-sleep cycles are severely disrupted by diseases affecting cytoplasmic homeostasis.

影响细胞质稳态的疾病严重扰乱觉醒-睡眠周期。

DOI：
发表时间：
2020
期刊：
影响因子：
11.1
作者：
Beesley, Stephen;Kim, Dae Wook;D'Alessandro, Matthew;Jin, Yuanhu;Lee, Kwangjun;Joo, Hyunjeong;Young, Yang;Tomko Jr, Robert J;Faulkner, John;Gamsby, Joshua;Kim, Jae Kyoung;Lee, Choogon
通讯作者：
Lee, Choogon

Novel targets of β‐TrCP cooperatively accelerate carbohydrate and fatty acid consumption

β-TrCP 的新目标协同加速碳水化合物和脂肪酸的消耗。

DOI：
10.1002/jcp.31095
发表时间：
2023-08-16
期刊：
Journal of cellular physiology
影响因子：
5.6
作者：
H. Joo;Matthew D’Aless;ro;ro;Gaeun Oh;Sora Han;Woojung Kim;Ga Eun Chung;Youjeong Jang;Jung Bok Lee;Choogon Lee;Young Yang
通讯作者：
Young Yang