Systems Biology Modeling of Severe Hospital-Acquired Pneumonia
严重医院获得性肺炎的系统生物学模型
基本信息
- 批准号:10551467
- 负责人:
- 金额:$ 43.35万
- 依托单位:
- 依托单位国家:美国
- 项目类别:
- 财政年份:2018
- 资助国家:美国
- 起止时间:2018-01-17 至 2027-12-31
- 项目状态:未结题
- 来源:
- 关键词:AgeAntibioticsBacteriaBiological AssayBronchoalveolar LavageBronchoalveolar Lavage FluidClinicalCommunitiesComplicationComputer ModelsDataDedicationsDeteriorationDevelopmentDiseaseDisease OutcomeEnrollmentFailureFlow CytometryFundingFutureGeneticGenomeGoalsHospitalizationHospitalsImmune responseImmunosuppressionInfectionInflammatory ResponseInterventionIntervention StudiesKlebsiellaKnowledgeLungMechanical ventilationMetadataModelingMorbidity - disease rateMulti-Drug ResistanceMultiomic DataNosocomial pneumoniaOutcomePathogenesisPathogenicityPatient-Focused OutcomesPatientsPatternPneumoniaPseudomonas aeruginosaResearchResearch Project GrantsResourcesRespiratory FailureRibosomal RNASamplingShotgunsStaphylococcus aureusSystems BiologyTechniquesTestingTherapeutic InterventionUnfavorable Clinical OutcomeValidationWorkbiobankbiomarker identificationbiosignatureclinical predictorscohortcommunity acquired pneumoniacytokinehumanized mouseimprovedinsightlung microbiomemetagenomic sequencingmicrobiomemicrobiotamortalitymouse modelmultiple omicsnovelnovel therapeutic interventionoutcome predictionpathogenpathogenic bacteriapneumonia modelpneumonia treatmentpredict clinical outcomepredictive modelingpredictive testresponsesingle-cell RNA sequencingtranscriptometranscriptomicsventilator-associated pneumonia
项目摘要
PROJECT SUMMARY/ABSTRACT – Project 2
Mechanical ventilation has saved the lives of countless patients with respiratory failure but may lead to the
dreaded complication of ventilator-associated pneumonia (VAP), a form of hospital-acquired pneumonia (HAP).
HAP/VAP are associated with particularly high mortality rates despite the administration of appropriate and highly
potent antibiotics. Recent work suggests that the host inflammatory response, the specific pathogenic strain
causing the infection, and the pulmonary microbiome all contribute to the pathogenesis of HAP/VAP. However,
to our knowledge these three contributing factors have not been comprehensively examined together. To better
understand HAP/VAP, we established the Successful Clinical Response in Pneumonia Therapy (SCRIPT)
Systems Biology Center to enroll pneumonia patients, collect bronchoalveolar lavage samples from them, and
apply multi-omic approaches to these samples. We hypothesize that these approaches will identify specific host
response patterns, pathogen genetic biosignatures, and pulmonary microbiome consortia that define and predict
the clinical trajectory of patients with HAP/VAP and define the pathogenesis of these infections. To test this
hypothesis, we will perform the following aims: (1) Identify host response biosignatures, (2) features of bacterial
pathogens, and (3) patterns of pulmonary microbiome consortia that inform pathogenesis and are associated
with clinical improvement or deterioration in HAP/VAP. (4) Integrate host response, pathogen, and microbiome
features with clinical metadata to generate a comprehensive computational model that predicts clinical outcomes
and favorable/unfavorable transitions in HAP/VAP. The data we generate will be useful clinically in identifying
those patients who require aggressive management and scientifically in providing a deeper understanding of the
pathogenesis of HAP/VAP.
项目摘要/摘要 - 项目2
机械通气挽救了无数呼吸衰竭患者的生命,但可能导致
呼吸机相关肺炎(VAP)的可怕并发症,这是一种医院获得的肺炎(HAP)。
HAP/VAP与尤其高的死亡率目的地有关
潜在的抗生素。最近的工作表明宿主炎症反应,特定的致病菌株
引起感染,肺微生物组均导致HAP/VAP的发病机理。然而,
据我们所知,这三个促成因素尚未得到全面研究。更好
了解HAP/VAP,我们建立了肺炎治疗(脚本)的成功临床反应
系统生物学中心注册肺炎患者,从中收集支气管肺泡样品,然后
对这些样品采用多词方法。我们假设这些方法将确定特定的主机
反应模式,病原体遗传生物签名和定义和预测的肺微生物组伴侣
HAP/VAP患者的临床轨迹并定义了这些感染的发病机理。测试这个
假设,我们将执行以下目的:(1)确定宿主反应生物签名,(2)细菌的特征
病原体和(3)肺微生物组伴侣的模式,这些模式为发病机理提供了信息
HAP/VAP中的临床改进或确定。 (4)整合宿主反应,病原体和微生物组
具有临床元数据的功能,生成一个预测临床结果的综合计算模型
HAP/VAP中有利/不利的过渡。我们生成的数据将在临床上有用
那些需要积极管理并科学地提供更深入了解的患者
HAP/VAP的发病机理。
项目成果
期刊论文数量(0)
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{{ truncateString('ALAN R HAUSER', 18)}}的其他基金
Assessing SARS-CoV-2 Variant Evolution in Patients
评估患者中的 SARS-CoV-2 变异进化
- 批准号:
10426993 - 财政年份:2021
- 资助金额:
$ 43.35万 - 项目类别:
Dynamics of Pseudomonas aeruginosa During Bacteremia
菌血症期间铜绿假单胞菌的动态
- 批准号:
10222524 - 财政年份:2020
- 资助金额:
$ 43.35万 - 项目类别:
Dynamics of Pseudomonas aeruginosa During Bacteremia
菌血症期间铜绿假单胞菌的动态
- 批准号:
10042352 - 财政年份:2020
- 资助金额:
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Pathogen and Microbiome Temporal Changes During Resolution of HAP
HAP 消退过程中病原体和微生物组的时间变化
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10097985 - 财政年份:2018
- 资助金额:
$ 43.35万 - 项目类别:
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