Collaborative Research: Digitization TCN: Digitizing collections to trace parasite-host associations and predict the spread of vector-borne disease

合作研究：数字化 TCN：数字化馆藏以追踪寄生虫-宿主关联并预测媒介传播疾病的传播

• 批准号: 1901932
• 负责人: Stephen Cameron
• 金额: $ 111.27万
• 依托单位: Purdue University
• 依托单位国家: 美国
• 项目类别: Continuing Grant
• 财政年份: 2019
• 资助国家: 美国
• 起止时间: 2019-09-01 至 2024-08-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1901932&HistoricalAwards=false
• 关键词: Collaborative; Research; Digitization; TCN; Digitizing

Arthropod parasites (specifically, insects and their relatives) are responsible for economically critical issues in human health, wildlife conservation, and livestock productivity. Because natural history collections are permanent repositories for past and present parasite specimens, these collections and their data can help address these significant societal challenges in human and animal health and safety. Natural history collections often contain specimens and ancillary materials that are completely unknown to the broader community, yet represent irreplaceable knowledge about organismal habitats, distributions, and parasite-host associations. Further, these collections yield information that can be used to model ecological processes and changes in species distributions, predict the future spread of human and animal disease, update taxonomy, and help identify under-represented parasite groups in urgent need of sampling and threatened parasite diversity in need of conservation. This project will provide digital records (i.e., specimen label data and images) of invaluable arthropod parasite collections to make research-ready baseline data accessible online, catalyzing new research and education initiatives. These newly digitized data will have immediate and long-lasting benefits for our understanding of organismal associations, biodiversity, and beyond. The Terrestrial Parasite Tracker Thematic Collection Network (TPT-TCN) will digitize over one million arthropod specimens representing species that are significant parasites and disease vectors of vertebrates in the United States. This digitization effort will integrate millions of vertebrate host records with vector and disease monitoring data shared by state and federal agency collaborators, creating a novel foundation for integrative, long-term research. This project is a collaboration of taxonomists and curators from vertebrate and invertebrate collections, as well as epidemiologists, ecologists, data-scientists, and biodiversity informatics specialists. This reach is further extended by the 26 collaborating research collections and other initiatives. This project will empower ongoing citizen science and public awareness campaigns with the tools to understand distribution changes of arthropod vectors and associated diseases due to environmental change and global movement. Public education initiatives include partnering with natural history museums to educate the public about parasites via science-focused lectures, exhibits, summer youth programs, informal presentations, and developing new online educational resources for teachers in underserved communities. All specimen images generated by this project will be used for the development of a rapid identification tool for parasites which will be made accessible through the internet and smartphone apps and shared with iDigBio (idigbio.org). The TPT-TCN will also develop and implement undergraduate teaching modules focused on data held in natural history collections. These modules will be disseminated to academic institutions across the United States and made available online.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

节肢动物寄生虫（特别是昆虫及其亲属）对人类健康、野生动物保护和牲畜生产力等方面的经济关键问题负有责任。 由于自然历史收藏品是过去和现在寄生虫标本的永久储存库，因此这些收藏品及其数据可以帮助解决人类和动物健康和安全方面的重大社会挑战。 自然历史收藏品通常包含更广泛的社区完全未知的标本和辅助材料，但代表了有关生物栖息地、分布和寄生虫-宿主关联的不可替代的知识。 此外，这些收集产生的信息可用于模拟生态过程和物种分布的变化，预测人类和动物疾病的未来传播，更新分类学，并帮助识别迫切需要采样和受到威胁的寄生虫多样性的代表性不足的寄生虫群体需要保护。 该项目将提供宝贵的节肢动物寄生虫收藏的数字记录（即标本标签数据和图像），使研究就绪的基线数据可以在线访问，从而促进新的研究和教育举措。 这些新的数字化数据将为我们理解有机体关联、生物多样性等带来直接和长期的好处。 陆地寄生虫追踪器主题收集网络 (TPT-TCN) 将对超过一百万个节肢动物标本进行数字化，这些标本代表了美国脊椎动物的重要寄生虫和疾病媒介物种。 这项数字化工作将把数百万条脊椎动物宿主记录与州和联邦机构合作者共享的病媒和疾病监测数据整合起来，为综合性长期研究奠定新的基础。 该项目是脊椎动物和无脊椎动物收藏的分类学家和馆长以及流行病学家、生态学家、数据科学家和生物多样性信息学专家的合作。 26 个合作研究收藏和其他举措进一步扩大了这一范围。 该项目将为正在进行的公民科学和公众意识活动提供工具，以了解由于环境变化和全球运动而导致的节肢动物媒介和相关疾病的分布变化。 公共教育举措包括与自然历史博物馆合作，通过以科学为重点的讲座、展览、暑期青年计划、非正式演示，向公众宣传寄生虫知识，并为服务欠缺社区的教师开发新的在线教育资源。 该项目生成的所有样本图像将用于开发寄生虫快速识别工具，该工具可通过互联网和智能手机应用程序访问，并与 iDigBio (idigbio.org) 共享。 TPT-TCN 还将开发和实施以自然历史馆藏数据为重点的本科生教学模块。 这些模块将分发给美国各地的学术机构并在网上提供。该奖项反映了 NSF 的法定使命，并通过使用基金会的智力价值和更广泛的影响审查标准进行评估，被认为值得支持。

项目成果

Human Health, Interagency Coordination, and the Need for Biodiversity Data

人类健康、机构间协调和生物多样性数据的需求

• DOI: 10.1093/biosci/biaa065
• 发表时间: 2020-06
• 期刊: BioScience
• 影响因子: 10.1
• 作者: Zaspel, Jennifer M;Allen, Julie M;Tyrrell, Christopher D;Lemoine, Nate;Jacobus, Luke M;Klem, Crystal;Goodwin, Jillian;Bates, John M
• 通讯作者: Bates, John M

Making Parasite-Host Associations Visible using Global Biotic Interactions

利用全球生物相互作用使寄生虫-宿主关联可见

• DOI: 10.3897/biss.4.58985
• 发表时间: 2020-10
• 期刊: Biodiversity Information Science and Standards
• 作者: Seltmann, Katja;Poelen, Jorrit;Sullivan, Kathryn;Zaspel, Jennifer
• 通讯作者: Zaspel, Jennifer

Integrating Biodiversity Infrastructure into Pathogen Discovery and Mitigation of Emerging Infectious Diseases

将生物多样性基础设施纳入病原体发现和缓解新发传染病

• DOI: 10.1093/biosci/biaa064
• 发表时间: 2020-06
• 期刊: BioScience
• 影响因子: 10.1
• 作者: Cook, Joseph A;Arai, Satoru;Armién, Blas;Bates, John;Bonilla, Carlos A;Cortez, Maria Beatriz;Dunnum, Jonathan L;Ferguson, Adam W;Johnson, Karl M;Khan, Faisal Ali;et al
• 通讯作者: et al