Collaborative Research: Unlocking the evolutionary history of Schiedea (carnation family, Caryophyllaceae): rapid radiation of an endemic plant genus in the Hawaiian Islands

合作研究：解开石竹科（石竹科）石竹的进化史：夏威夷群岛特有植物属的快速辐射

• 批准号: 1752785
• 负责人: Norman Wickett
• 金额: $ 47.15万
• 依托单位: Chicago Horticultural Society
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2018
• 资助国家: 美国
• 起止时间: 2018-08-15 至 2024-05-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=1752785&HistoricalAwards=false
• 关键词: Collaborative; Research; Unlocking; evolutionary; history

-------------------------------------------------------------------------------------------------------------------------------Plants exhibit a diverse array of breeding strategies, but the genetic changes and environmental conditions that lead to this diversity are poorly known. Pinpointing these genetic mutations and understanding the environmental conditions that favor changes in breeding system are of great interest to both evolutionary biologists and plant breeders. The plant genus Schiedea (carnation family, Caryophyllaceae) is only found on the Hawaiian Islands and is a model to better understand the evolution of breeding strategies in plants. Among the 32 species of Schiedea, some only breed with other individuals of the same species, others only self-fertilize, and others still are transitional between the two. Additionally, different outbreeding species of Schiedea use different pollinators, including a recently discovered moth found only in Hawaii. This project will apply cutting-edge DNA sequencing and analysis methods to reconstruct the genealogy of Scheidea and investigate the evolution of plant breeding strategies within the group. Data from this project will provide new insights into the evolution of plant breeding strategies that could be applied to crop species in the carnation family, including amaranth, rhubarb, quinoa and spinach. The project incorporates extensive opportunities for education and training at multiple levels, including high school teachers, undergraduate and graduate students, and a postdoctoral researcher. The project will produce educational videos about Hawaiian plants for posting on the internet to inform the public. Researchers will also offer public seminars about Schiedea highlighting their research findings about the group.The primary aim of this project is to reconstruct the pattern of breeding system evolution in Schiedea (Caryophyllaceae) through an integrated program of field, laboratory, and genomic studies. Nuclear genome sequencing, targeted sequence capture, and Genotyping By Sequencing (GBS) methods will be used to reconstruct a highly resolved phylogenetic tree of Schiedea, identify sources of phylogenetic conflict, and investigate patterns of introgression among taxa. The phylogenetic hypotheses developed will be used to interpret the evolution of breeding systems including transitions from hermaphroditism to dioecy, shifts from biotic to abiotic pollination, and traits associated with pollination biology (including scent and nectar production). Field studies and densely distributed Single Nucleotide Polymorphisms (SNP) markers generated by GBS will be used to test hypotheses concerning the influence of reproductive systems on gene flow, hybridization, and population genetic structure. Data obtained during this project will be applied directly to land management in Hawaii, including the establishment of wild populations of different Schiedea species.This award reflects NSF's statutory mission and has been deemed worthy of support through evaluation using the Foundation's intellectual merit and broader impacts review criteria.

-------------------------------------------------- -------------------------------------------------- ---------------------------植物表现出多种育种策略，但导致这种多样性的遗传变化和环境条件却很差已知。进化生物学家和植物育种家都对查明这些基因突变并了解有利于育种系统变化的环境条件非常感兴趣。 Schiedea 植物属（康乃馨科，石竹科）仅在夏威夷群岛发现，是更好地了解植物育种策略进化的模型。在Schiedea的32个物种中，有些只与同种的其他个体繁殖，有些只自体受精，有些仍然是两者之间的过渡。此外，不同的 Schiedea 近亲繁殖物种使用不同的传粉媒介，包括最近发现的仅在夏威夷发现的蛾。该项目将应用尖端的DNA测序和分析方法来重建Scheidea的谱系并研究该群体内植物育种策略的演变。该项目的数据将为植物育种策略的演变提供新的见解，这些策略可应用于康乃馨科作物物种，包括苋菜、大黄、藜麦和菠菜。该项目包含了多层次的广泛教育和培训机会，包括高中教师、本科生和研究生以及博士后研究员。该项目将制作有关夏威夷植物的教育视频，并发布在互联网上以告知公众。研究人员还将举办有关 Schiedea 的公开研讨会，重点介绍他们对该群体的研究成果。该项目的主要目的是通过实地、实验室和基因组研究的综合计划，重建 Schiedea（石竹科）育种系统进化的模式。核基因组测序、靶向序列捕获和测序基因分型（GBS）方法将用于重建高度解析的 Schiedea 系统发育树，识别系统发育冲突的来源，并研究类群之间的基因渗入模式。所开发的系统发育假设将用于解释育种系统的进化，包括从雌雄同体到雌雄异株的转变、从生物授粉到非生物授粉的转变，以及与授粉生物学相关的性状（包括气味和花蜜产生）。现场研究和 GBS 产生的密集分布的单核苷酸多态性 (SNP) 标记将用于检验有关生殖系统对基因流、杂交和群体遗传结构影响的假设。该项目期间获得的数据将直接应用于夏威夷的土地管理，包括建立不同 Schiedea 物种的野生种群。该奖项反映了 NSF 的法定使命，并通过使用基金会的智力价值和更广泛的影响审查进行评估，被认为值得支持标准。

项目成果

Target Enrichment and Extensive Population Sampling Help Untangle the Recent, Rapid Radiation of Oenothera Sect. Calylophus

目标丰富和广泛的群体采样有助于解开月见草教派最近的快速辐射问题。

• DOI: 10.1093/sysbio/syac032
• 发表时间: 2022-05
• 期刊: Systematic Biology
• 影响因子: 6.5
• 作者: Cooper, Benjamin J.;Moore, Michael J.;Douglas, Norman A.;Wagner, Warren L.;Johnson, Matthew G.;Overson, Rick P.;Kinosian, Sylvia P.;McDonnell, Angela J.;Levin, Rachel A.;Raguso, Robert A.;et al
• 通讯作者: et al

Incomplete reproductive isolation and low genetic differentiation despite floral divergence across varying geographic scales in Castilleja

尽管卡斯蒂利亚不同地理范围内的花分化，但生殖隔离不完全，遗传分化低

• DOI: 10.1002/ajb2.1700
• 发表时间: 2021-07
• 期刊: American Journal of Botany
• 影响因子: 3
• 作者: Wenzell, Katherine E.;McDonnell, Angela J.;Wickett, Norman J.;Fant, Jeremie B.;Skogen, Krissa A.
• 通讯作者: Skogen, Krissa A.