Geometric Mechanics and Dynamical Systems Approach to the Theory and Computation of Chemical Reaction Rates

化学反应速率理论和计算的几何力学和动力系统方法

• 批准号: 0505711
• 负责人: Jerrold Marsden
• 金额: $ 33.57万
• 依托单位: California Institute of Technology
• 依托单位国家: 美国
• 项目类别: Standard Grant
• 财政年份: 2005
• 资助国家: 美国
• 起止时间: 2005-08-01 至 2009-07-31
• 项目状态: 已结题
• 来源: https://www.nsf.gov/awardsearch/showAward?AWD_ID=0505711&HistoricalAwards=false
• 关键词: Geometric; Mechanics; Dynamical; Systems; Approach

A long-standing problem in the chemistry community has been to reliably compute chemical reaction and isomerization rates from first principles. The traditional technique for doing this, known as transition state theory, makes statistical assumptions on the nature of the underlying dynamical processes. A detailed examination of even relatively simple systems, such as the ionization of loosely bound electrons, shows that this assumption is not valid, and it is now realized that in order to solve these problems one must take into account the detailed structure of the dynamics. Using recently developed techniques based on geometric mechanics (especially the use of reduction theory and shape space dynamics), together with a detailed knowledge of the dynamics (especially normal form theory and invariant manifold tubes), as well as Monte Carlo sampling methods (for computing volumes of intersecting reaction entrance and exit regions in phase space), this problem will be solved first for relatively simple molecules undergoing isomerization and then progressing to more complex situations. This research contributes to one of the grand challenges of the mathematical and computational sciences -- namely the ability to accurately compute from first principles (that is, using so-called ab initio calculations) important molecular processes such as chemical reaction rates and the dynamical behavior of biomolecules. The specific advances that make this possible are recent developments in computational techniques for dynamical systems as well as improved understanding of the complex geometry of the exit and entrance channels (or tubes) that govern reactions and conformation changes. These are fundamental advances that, when combined with dimension and model reduction techniques, will provide a powerful tool for the study of more complex molecular systems.

化学界长期存在的一个问题是根据第一原理可靠地计算化学反应和异构化速率。执行此操作的传统技术称为过渡态理论，它对潜在动态过程的性质做出统计假设。即使对相对简单的系统（例如松散束缚电子的电离）的详细检查表明，这一假设是无效的，而且现在认识到，为了解决这些问题，必须考虑动力学的详细结构。使用最近开发的基于几何力学的技术（特别是使用约简理论和形状空间动力学），结合动力学的详细知识（特别是范式理论和不变流形管），以及蒙特卡罗采样方法（用于计算相空间中相交反应入口和出口区域的体积），这个问题将首先针对经历异构化的相对简单的分子得到解决，然后再发展到更复杂的情况。这项研究有助于解决数学和计算科学的重大挑战之一，即根据第一原理（即使用所谓的从头计算）准确计算重要分子过程（例如化学反应速率和动力学行为）的能力的生物分子。使这成为可能的具体进展是动力系统计算技术的最新发展，以及对控制反应和构象变化的出口和入口通道（或管）的复杂几何形状的更好的理解。这些都是根本性的进步，当与维度和模型缩减技术相结合时，将为研究更复杂的分子系统提供强大的工具。